Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30725
         (717 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.71 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    24   1.2  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           24   1.7  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    24   1.7  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   2.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   8.8  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 25.0 bits (52), Expect = 0.71
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 168  PLGDHYYGHQDTEYARRERT 227
            PL +H Y   D++Y+  ERT
Sbjct: 1329 PLSEHIYSSIDSDYSTLERT 1348


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 641 PQPDHILVTEPKDEPVPLEPPAK 709
           P   H  VT   DEP+P  PP +
Sbjct: 360 PSVQHEFVTFDLDEPLPPPPPIR 382


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 264 IASDYGSELTDYASFLSEHTLCPGGHNND 178
           ++S + S L +Y + +S H   PG  N D
Sbjct: 40  VSSGFRSSLRNYKTLISSHDELPGHINCD 68


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +2

Query: 455 QAAWSTCQINEVCTWTHDHSGDPCNDYVNTATRHVLLRQGVLGIKV 592
           Q AW   ++ + C+    H G P    +   T  VL   GV+G K+
Sbjct: 558 QIAWMALKMIQACSHHLTHKGKPIRMRIGIHTGMVL--AGVVGKKM 601


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 180 DLRADGSDPHFH 145
           ++  DGS PHFH
Sbjct: 621 EISQDGSSPHFH 632


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = -2

Query: 473  TLTTQLARYNNFTTTGTRFHDETENTIASTTYSETSD 363
            T+ T L +Y N+T     F    +    + TY +T +
Sbjct: 1175 TVLTGLRKYTNYTIQVLAFTRVGDGVPTTVTYCQTEE 1211


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = -2

Query: 473  TLTTQLARYNNFTTTGTRFHDETENTIASTTYSETSD 363
            T+ T L +Y N+T     F    +    + TY +T +
Sbjct: 1171 TVLTGLRKYTNYTIQVLAFTRVGDGVPTTVTYCQTEE 1207


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +1

Query: 586  QGQNHVAVGPARQERPEEATTRPHPGNRAQGRARA 690
            Q Q  +   P+  +R     T P P N  QG+A+A
Sbjct: 980  QSQQPIMTDPSPFKRGRY--TPPQPANAQQGQAQA 1012


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,009
Number of Sequences: 438
Number of extensions: 4318
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)