Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30725
(717 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g35530.1 68418.m04226 40S ribosomal protein S3 (RPS3C) 150 8e-37
At3g53870.1 68416.m05951 40S ribosomal protein S3 (RPS3B) riboso... 146 1e-35
At2g31610.1 68415.m03862 40S ribosomal protein S3 (RPS3A) 146 1e-35
At3g06190.2 68416.m00712 speckle-type POZ protein-related simila... 37 0.015
At3g06190.1 68416.m00711 speckle-type POZ protein-related simila... 37 0.015
At5g19000.1 68418.m02257 speckle-type POZ protein-related contai... 32 0.33
At2g41380.1 68415.m05107 embryo-abundant protein-related similar... 30 1.3
At5g56930.1 68418.m07107 zinc finger (CCCH-type) family protein ... 29 3.1
At4g36190.1 68417.m05149 serine carboxypeptidase S28 family prot... 29 4.1
At2g15590.2 68415.m01786 expressed protein 28 5.4
At2g25150.1 68415.m03008 transferase family protein similar to 1... 28 7.1
At1g20130.1 68414.m02518 family II extracellular lipase, putativ... 28 7.1
At3g17770.1 68416.m02267 dihydroxyacetone kinase family protein ... 27 9.4
At2g15590.1 68415.m01785 expressed protein 27 9.4
At1g56240.1 68414.m06465 SKP1 interacting partner 3-related cont... 27 9.4
At1g51580.1 68414.m05806 KH domain-containing protein 27 9.4
At1g44100.1 68414.m05094 amino acid permease 5, putative (AAP5) ... 27 9.4
>At5g35530.1 68418.m04226 40S ribosomal protein S3 (RPS3C)
Length = 248
Score = 150 bits (364), Expect = 8e-37
Identities = 70/86 (81%), Positives = 77/86 (89%)
Frame = +3
Query: 255 QKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARG 434
QKRF P+ SVELYAEKVA RGLCAIAQAESLRYKL+GGLAVRRACYGVLRF+MESGA+G
Sbjct: 74 QKRFKFPQDSVELYAEKVANRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKG 133
Query: 435 CEVVVSGKLRGQRAKSMKFVHGLMIT 512
CEV+VSGKLR RAKSMKF G M++
Sbjct: 134 CEVIVSGKLRAARAKSMKFKDGYMVS 159
Score = 119 bits (287), Expect = 2e-27
Identities = 60/75 (80%), Positives = 66/75 (88%)
Frame = +1
Query: 49 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSMLGEKGR 228
ISKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP+R+EIII ATRTQ++LGEKGR
Sbjct: 5 ISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGR 64
Query: 229 IIRELTSVVRSDSTF 273
IRELTS+V+ F
Sbjct: 65 RIRELTSLVQKRFKF 79
Score = 84.2 bits (199), Expect = 8e-17
Identities = 35/63 (55%), Positives = 46/63 (73%)
Frame = +2
Query: 512 SGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVP 691
SG P +Y++ A RHVLLRQGVLG+KVKIML WD +GK GP P PD +++ PK++ V
Sbjct: 160 SGQPTKEYIDAAVRHVLLRQGVLGLKVKIMLDWDPKGKQGPMTPLPDVVIIHTPKEDDVY 219
Query: 692 LEP 700
+ P
Sbjct: 220 IAP 222
>At3g53870.1 68416.m05951 40S ribosomal protein S3 (RPS3B) ribosomal
protein S3a - Xenopus laevis, PIR:R3XL3A
Length = 249
Score = 146 bits (354), Expect = 1e-35
Identities = 69/86 (80%), Positives = 75/86 (87%)
Frame = +3
Query: 255 QKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARG 434
QKRF P SVELYAEKV RGLCAIAQAESLRYKL+GGLAVRRACYGVLRF+MESGA+G
Sbjct: 74 QKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKG 133
Query: 435 CEVVVSGKLRGQRAKSMKFVHGLMIT 512
CEV+VSGKLR RAKSMKF G M++
Sbjct: 134 CEVIVSGKLRAARAKSMKFKDGYMVS 159
Score = 119 bits (287), Expect = 2e-27
Identities = 60/75 (80%), Positives = 66/75 (88%)
Frame = +1
Query: 49 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSMLGEKGR 228
ISKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP+R+EIII ATRTQ++LGEKGR
Sbjct: 5 ISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGR 64
Query: 229 IIRELTSVVRSDSTF 273
IRELTS+V+ F
Sbjct: 65 RIRELTSLVQKRFKF 79
Score = 83.8 bits (198), Expect = 1e-16
Identities = 37/68 (54%), Positives = 50/68 (73%)
Frame = +2
Query: 512 SGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVP 691
SG P +Y+++A RHVLLRQGVLGIKVK+ML WD +G +GPK P PD +++ PK+E
Sbjct: 160 SGQPTKEYIDSAVRHVLLRQGVLGIKVKVMLDWDPKGISGPKTPLPDVVIIHSPKEEEA- 218
Query: 692 LEPPAKCA 715
+ PA+ A
Sbjct: 219 IYAPAQVA 226
>At2g31610.1 68415.m03862 40S ribosomal protein S3 (RPS3A)
Length = 250
Score = 146 bits (354), Expect = 1e-35
Identities = 69/86 (80%), Positives = 75/86 (87%)
Frame = +3
Query: 255 QKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARG 434
QKRF P SVELYAEKV RGLCAIAQAESLRYKL+GGLAVRRACYGVLRF+MESGA+G
Sbjct: 74 QKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKG 133
Query: 435 CEVVVSGKLRGQRAKSMKFVHGLMIT 512
CEV+VSGKLR RAKSMKF G M++
Sbjct: 134 CEVIVSGKLRAARAKSMKFKDGYMVS 159
Score = 119 bits (287), Expect = 2e-27
Identities = 60/75 (80%), Positives = 66/75 (88%)
Frame = +1
Query: 49 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSMLGEKGR 228
ISKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP+R+EIII ATRTQ++LGEKGR
Sbjct: 5 ISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGR 64
Query: 229 IIRELTSVVRSDSTF 273
IRELTS+V+ F
Sbjct: 65 RIRELTSLVQKRFKF 79
Score = 87.4 bits (207), Expect = 8e-18
Identities = 40/68 (58%), Positives = 49/68 (72%)
Frame = +2
Query: 512 SGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVP 691
SG P +Y++ A RHVLLRQGVLGIKVKIML WD GK+GPK P PD +++ PKD+ V
Sbjct: 160 SGQPTKEYIDAAVRHVLLRQGVLGIKVKIMLDWDPTGKSGPKTPLPDVVIIHAPKDD-VV 218
Query: 692 LEPPAKCA 715
PA+ A
Sbjct: 219 YSAPAQAA 226
>At3g06190.2 68416.m00712 speckle-type POZ protein-related similar
to SPOP (novel nuclear speckle-type protein)
(SP:O43791) [Homo sapiens]; contains Pfam PF00651 :
BTB/POZ domain; contains Pfam PF00917: MATH domain
Length = 295
Score = 36.7 bits (81), Expect = 0.015
Identities = 16/30 (53%), Positives = 20/30 (66%)
Frame = -1
Query: 246 SELTDYASFLSEHTLCPGGHNNDLRADGSD 157
SEL +Y + LSEH+L GH +L ADG D
Sbjct: 255 SELLEYVARLSEHSLTSSGHRKELFADGCD 284
>At3g06190.1 68416.m00711 speckle-type POZ protein-related similar
to SPOP (novel nuclear speckle-type protein)
(SP:O43791) [Homo sapiens]; contains Pfam PF00651 :
BTB/POZ domain; contains Pfam PF00917: MATH domain
Length = 406
Score = 36.7 bits (81), Expect = 0.015
Identities = 16/30 (53%), Positives = 20/30 (66%)
Frame = -1
Query: 246 SELTDYASFLSEHTLCPGGHNNDLRADGSD 157
SEL +Y + LSEH+L GH +L ADG D
Sbjct: 366 SELLEYVARLSEHSLTSSGHRKELFADGCD 395
>At5g19000.1 68418.m02257 speckle-type POZ protein-related contains
Pfam PF00651 : BTB/POZ domain; contains Pfam PF00917:
MATH domain; similar to Speckle-type POZ protein
(SP:O43791) [Homo sapiens]
Length = 442
Score = 32.3 bits (70), Expect = 0.33
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -1
Query: 246 SELTDYASFLSEHTLCPGGHNNDLRADGSD 157
+EL Y + LSEH++ GH ++ ADG D
Sbjct: 402 TELLQYVARLSEHSVIVSGHRKEIFADGCD 431
>At2g41380.1 68415.m05107 embryo-abundant protein-related similar to
embryo-abundant protein [Picea glauca] GI:1350531
Length = 269
Score = 30.3 bits (65), Expect = 1.3
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Frame = +1
Query: 109 LTRELAEDGYSGVEVRVTPIRSEIIIMATRTQS----MLGEKGRIIRELTSVVRSDSTFQ 276
L R L EDGY G+E + ++ +T +QS + EK + E + +RS S +Q
Sbjct: 165 LARRLVEDGYRGIEFPFEKVDND---ESTESQSFPVRFVTEKEMVFEEYMTYLRSSSAYQ 221
Query: 277 S 279
+
Sbjct: 222 T 222
>At5g56930.1 68418.m07107 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 675
Score = 29.1 bits (62), Expect = 3.1
Identities = 20/73 (27%), Positives = 31/73 (42%)
Frame = +2
Query: 320 PLRYRPGRISKIQAYRRSRCTSCLLWCSPFHHGIWCPWL*SCCIWQAAWSTCQINEVCTW 499
P+ +P I + Y + RC C H I CC + A +C + C +
Sbjct: 345 PVAPKPKPIKYCRHYLKGRCHEGDK-CKFSHDTIPETKCSPCCYF--ATQSCMKGDDCPF 401
Query: 500 THDHSGDPCNDYV 538
HD S PCN+++
Sbjct: 402 DHDLSKYPCNNFI 414
>At4g36190.1 68417.m05149 serine carboxypeptidase S28 family protein
contains Pfam PF05577: Serine carboxypeptidase S28
Length = 493
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +2
Query: 50 FQRSENLLEMGFSRQNSMSSSLGSWPRTATPAWKCGSLPSA 172
F RS N+ F S S +L +W R P CGSL S+
Sbjct: 161 FNRSSNVENPWFFFGVSYSGALSAWFRLKFPHLTCGSLASS 201
>At2g15590.2 68415.m01786 expressed protein
Length = 155
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/51 (27%), Positives = 23/51 (45%)
Frame = -1
Query: 309 PPFQHTILQIALEC*IASDYGSELTDYASFLSEHTLCPGGHNNDLRADGSD 157
P HTI + L C + Y + L+ +SF S+H + + + G D
Sbjct: 73 PRLSHTIPALDLYCAVHRQYSNHLSRTSSFASDHEVSNSNNITTIVDKGDD 123
>At2g25150.1 68415.m03008 transferase family protein similar to
10-deacetylbaccatin III-10-O-acetyl transferase
[gi:6746554], 2-debenzoyl-7,13-diacetylbaccatin
III-2-O-benzoyl transferase [gi:11559716] from Taxus
cuspidata; contains Pfam transferase family domain
PF00248; contains EST gb:R65039
Length = 461
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 177 LRADGSDPHFHAGVAVLGQLPSEELIEF 94
L+ SDP GV V+ +LP + ++EF
Sbjct: 418 LKPSKSDPSMEGGVKVIMKLPRDAMVEF 445
>At1g20130.1 68414.m02518 family II extracellular lipase, putative
contains Pfam profile PF00657: GDSL-like
Lipase/Acylhydrolase; similar to EXL3 (PMID:11431566)
Length = 1006
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = +2
Query: 632 PKKPQPDHILVTEPKDEPVPLEPPAKC 712
P KPQP EPK P P P C
Sbjct: 72 PPKPQPKPAPPPEPKPAPPPAPKPVPC 98
>At3g17770.1 68416.m02267 dihydroxyacetone kinase family protein
contains Pfam domains, PF02733: DAK1 domain and PF02734:
DAK2 domain
Length = 595
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = -3
Query: 541 VDVIIARVSRVIMSPCTNFIDLAR 470
VDV+++ V + I+SP TN++ + R
Sbjct: 239 VDVVVSHVLQQILSPETNYVPITR 262
>At2g15590.1 68415.m01785 expressed protein
Length = 125
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -1
Query: 309 PPFQHTILQIALEC*IASDYGSELTDYASFLSEH 208
P HTI + L C + Y + L+ +SF S+H
Sbjct: 73 PRLSHTIPALDLYCAVHRQYSNHLSRTSSFASDH 106
>At1g56240.1 68414.m06465 SKP1 interacting partner 3-related
contains similarity to SKP1 interacting partner 3
GI:10716951 from [Arabidopsis thaliana]
Length = 284
Score = 27.5 bits (58), Expect = 9.4
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Frame = +1
Query: 25 LAIMAVNNISKKR--KFVGDGVFKAELNEFLTRELAED--GYSGVEVRVTPIRSEIII 186
+ + AV K+R K DG + EL EF+TRE +D S EV+ ++ I+I
Sbjct: 216 MTVEAVGGDGKRREPKARDDGWLEIELGEFVTREGEDDEVNMSLTEVKGYQLKGGIVI 273
>At1g51580.1 68414.m05806 KH domain-containing protein
Length = 621
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 166 IRSEIIIMATRTQSMLGEKGRIIRELTSVVRS 261
+ ++ ATRT +++G+ G +IR L SV S
Sbjct: 19 VHFRLLCPATRTGAIIGKGGSVIRHLQSVTGS 50
>At1g44100.1 68414.m05094 amino acid permease 5, putative (AAP5)
nearly identical to amino acid permease (AAP5) GI:608673
from [Arabidopsis thaliana]
Length = 480
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = -2
Query: 302 FSIQFYRLLWNVESLLTTEVSSRIMRPFSPSILCVLVAI 186
F++ +RL+W ++TT + S +M PF ++ +L AI
Sbjct: 377 FNLNLFRLVWRTFFVMTTTLISMLM-PFFNDVVGLLGAI 414
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,727,850
Number of Sequences: 28952
Number of extensions: 362102
Number of successful extensions: 1044
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1044
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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