BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30725 (717 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g35530.1 68418.m04226 40S ribosomal protein S3 (RPS3C) 150 8e-37 At3g53870.1 68416.m05951 40S ribosomal protein S3 (RPS3B) riboso... 146 1e-35 At2g31610.1 68415.m03862 40S ribosomal protein S3 (RPS3A) 146 1e-35 At3g06190.2 68416.m00712 speckle-type POZ protein-related simila... 37 0.015 At3g06190.1 68416.m00711 speckle-type POZ protein-related simila... 37 0.015 At5g19000.1 68418.m02257 speckle-type POZ protein-related contai... 32 0.33 At2g41380.1 68415.m05107 embryo-abundant protein-related similar... 30 1.3 At5g56930.1 68418.m07107 zinc finger (CCCH-type) family protein ... 29 3.1 At4g36190.1 68417.m05149 serine carboxypeptidase S28 family prot... 29 4.1 At2g15590.2 68415.m01786 expressed protein 28 5.4 At2g25150.1 68415.m03008 transferase family protein similar to 1... 28 7.1 At1g20130.1 68414.m02518 family II extracellular lipase, putativ... 28 7.1 At3g17770.1 68416.m02267 dihydroxyacetone kinase family protein ... 27 9.4 At2g15590.1 68415.m01785 expressed protein 27 9.4 At1g56240.1 68414.m06465 SKP1 interacting partner 3-related cont... 27 9.4 At1g51580.1 68414.m05806 KH domain-containing protein 27 9.4 At1g44100.1 68414.m05094 amino acid permease 5, putative (AAP5) ... 27 9.4 >At5g35530.1 68418.m04226 40S ribosomal protein S3 (RPS3C) Length = 248 Score = 150 bits (364), Expect = 8e-37 Identities = 70/86 (81%), Positives = 77/86 (89%) Frame = +3 Query: 255 QKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARG 434 QKRF P+ SVELYAEKVA RGLCAIAQAESLRYKL+GGLAVRRACYGVLRF+MESGA+G Sbjct: 74 QKRFKFPQDSVELYAEKVANRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKG 133 Query: 435 CEVVVSGKLRGQRAKSMKFVHGLMIT 512 CEV+VSGKLR RAKSMKF G M++ Sbjct: 134 CEVIVSGKLRAARAKSMKFKDGYMVS 159 Score = 119 bits (287), Expect = 2e-27 Identities = 60/75 (80%), Positives = 66/75 (88%) Frame = +1 Query: 49 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSMLGEKGR 228 ISKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP+R+EIII ATRTQ++LGEKGR Sbjct: 5 ISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGR 64 Query: 229 IIRELTSVVRSDSTF 273 IRELTS+V+ F Sbjct: 65 RIRELTSLVQKRFKF 79 Score = 84.2 bits (199), Expect = 8e-17 Identities = 35/63 (55%), Positives = 46/63 (73%) Frame = +2 Query: 512 SGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVP 691 SG P +Y++ A RHVLLRQGVLG+KVKIML WD +GK GP P PD +++ PK++ V Sbjct: 160 SGQPTKEYIDAAVRHVLLRQGVLGLKVKIMLDWDPKGKQGPMTPLPDVVIIHTPKEDDVY 219 Query: 692 LEP 700 + P Sbjct: 220 IAP 222 >At3g53870.1 68416.m05951 40S ribosomal protein S3 (RPS3B) ribosomal protein S3a - Xenopus laevis, PIR:R3XL3A Length = 249 Score = 146 bits (354), Expect = 1e-35 Identities = 69/86 (80%), Positives = 75/86 (87%) Frame = +3 Query: 255 QKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARG 434 QKRF P SVELYAEKV RGLCAIAQAESLRYKL+GGLAVRRACYGVLRF+MESGA+G Sbjct: 74 QKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKG 133 Query: 435 CEVVVSGKLRGQRAKSMKFVHGLMIT 512 CEV+VSGKLR RAKSMKF G M++ Sbjct: 134 CEVIVSGKLRAARAKSMKFKDGYMVS 159 Score = 119 bits (287), Expect = 2e-27 Identities = 60/75 (80%), Positives = 66/75 (88%) Frame = +1 Query: 49 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSMLGEKGR 228 ISKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP+R+EIII ATRTQ++LGEKGR Sbjct: 5 ISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGR 64 Query: 229 IIRELTSVVRSDSTF 273 IRELTS+V+ F Sbjct: 65 RIRELTSLVQKRFKF 79 Score = 83.8 bits (198), Expect = 1e-16 Identities = 37/68 (54%), Positives = 50/68 (73%) Frame = +2 Query: 512 SGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVP 691 SG P +Y+++A RHVLLRQGVLGIKVK+ML WD +G +GPK P PD +++ PK+E Sbjct: 160 SGQPTKEYIDSAVRHVLLRQGVLGIKVKVMLDWDPKGISGPKTPLPDVVIIHSPKEEEA- 218 Query: 692 LEPPAKCA 715 + PA+ A Sbjct: 219 IYAPAQVA 226 >At2g31610.1 68415.m03862 40S ribosomal protein S3 (RPS3A) Length = 250 Score = 146 bits (354), Expect = 1e-35 Identities = 69/86 (80%), Positives = 75/86 (87%) Frame = +3 Query: 255 QKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARG 434 QKRF P SVELYAEKV RGLCAIAQAESLRYKL+GGLAVRRACYGVLRF+MESGA+G Sbjct: 74 QKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKG 133 Query: 435 CEVVVSGKLRGQRAKSMKFVHGLMIT 512 CEV+VSGKLR RAKSMKF G M++ Sbjct: 134 CEVIVSGKLRAARAKSMKFKDGYMVS 159 Score = 119 bits (287), Expect = 2e-27 Identities = 60/75 (80%), Positives = 66/75 (88%) Frame = +1 Query: 49 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSMLGEKGR 228 ISKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP+R+EIII ATRTQ++LGEKGR Sbjct: 5 ISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGR 64 Query: 229 IIRELTSVVRSDSTF 273 IRELTS+V+ F Sbjct: 65 RIRELTSLVQKRFKF 79 Score = 87.4 bits (207), Expect = 8e-18 Identities = 40/68 (58%), Positives = 49/68 (72%) Frame = +2 Query: 512 SGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVP 691 SG P +Y++ A RHVLLRQGVLGIKVKIML WD GK+GPK P PD +++ PKD+ V Sbjct: 160 SGQPTKEYIDAAVRHVLLRQGVLGIKVKIMLDWDPTGKSGPKTPLPDVVIIHAPKDD-VV 218 Query: 692 LEPPAKCA 715 PA+ A Sbjct: 219 YSAPAQAA 226 >At3g06190.2 68416.m00712 speckle-type POZ protein-related similar to SPOP (novel nuclear speckle-type protein) (SP:O43791) [Homo sapiens]; contains Pfam PF00651 : BTB/POZ domain; contains Pfam PF00917: MATH domain Length = 295 Score = 36.7 bits (81), Expect = 0.015 Identities = 16/30 (53%), Positives = 20/30 (66%) Frame = -1 Query: 246 SELTDYASFLSEHTLCPGGHNNDLRADGSD 157 SEL +Y + LSEH+L GH +L ADG D Sbjct: 255 SELLEYVARLSEHSLTSSGHRKELFADGCD 284 >At3g06190.1 68416.m00711 speckle-type POZ protein-related similar to SPOP (novel nuclear speckle-type protein) (SP:O43791) [Homo sapiens]; contains Pfam PF00651 : BTB/POZ domain; contains Pfam PF00917: MATH domain Length = 406 Score = 36.7 bits (81), Expect = 0.015 Identities = 16/30 (53%), Positives = 20/30 (66%) Frame = -1 Query: 246 SELTDYASFLSEHTLCPGGHNNDLRADGSD 157 SEL +Y + LSEH+L GH +L ADG D Sbjct: 366 SELLEYVARLSEHSLTSSGHRKELFADGCD 395 >At5g19000.1 68418.m02257 speckle-type POZ protein-related contains Pfam PF00651 : BTB/POZ domain; contains Pfam PF00917: MATH domain; similar to Speckle-type POZ protein (SP:O43791) [Homo sapiens] Length = 442 Score = 32.3 bits (70), Expect = 0.33 Identities = 13/30 (43%), Positives = 19/30 (63%) Frame = -1 Query: 246 SELTDYASFLSEHTLCPGGHNNDLRADGSD 157 +EL Y + LSEH++ GH ++ ADG D Sbjct: 402 TELLQYVARLSEHSVIVSGHRKEIFADGCD 431 >At2g41380.1 68415.m05107 embryo-abundant protein-related similar to embryo-abundant protein [Picea glauca] GI:1350531 Length = 269 Score = 30.3 bits (65), Expect = 1.3 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 4/61 (6%) Frame = +1 Query: 109 LTRELAEDGYSGVEVRVTPIRSEIIIMATRTQS----MLGEKGRIIRELTSVVRSDSTFQ 276 L R L EDGY G+E + ++ +T +QS + EK + E + +RS S +Q Sbjct: 165 LARRLVEDGYRGIEFPFEKVDND---ESTESQSFPVRFVTEKEMVFEEYMTYLRSSSAYQ 221 Query: 277 S 279 + Sbjct: 222 T 222 >At5g56930.1 68418.m07107 zinc finger (CCCH-type) family protein contains Pfam domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar) Length = 675 Score = 29.1 bits (62), Expect = 3.1 Identities = 20/73 (27%), Positives = 31/73 (42%) Frame = +2 Query: 320 PLRYRPGRISKIQAYRRSRCTSCLLWCSPFHHGIWCPWL*SCCIWQAAWSTCQINEVCTW 499 P+ +P I + Y + RC C H I CC + A +C + C + Sbjct: 345 PVAPKPKPIKYCRHYLKGRCHEGDK-CKFSHDTIPETKCSPCCYF--ATQSCMKGDDCPF 401 Query: 500 THDHSGDPCNDYV 538 HD S PCN+++ Sbjct: 402 DHDLSKYPCNNFI 414 >At4g36190.1 68417.m05149 serine carboxypeptidase S28 family protein contains Pfam PF05577: Serine carboxypeptidase S28 Length = 493 Score = 28.7 bits (61), Expect = 4.1 Identities = 16/41 (39%), Positives = 20/41 (48%) Frame = +2 Query: 50 FQRSENLLEMGFSRQNSMSSSLGSWPRTATPAWKCGSLPSA 172 F RS N+ F S S +L +W R P CGSL S+ Sbjct: 161 FNRSSNVENPWFFFGVSYSGALSAWFRLKFPHLTCGSLASS 201 >At2g15590.2 68415.m01786 expressed protein Length = 155 Score = 28.3 bits (60), Expect = 5.4 Identities = 14/51 (27%), Positives = 23/51 (45%) Frame = -1 Query: 309 PPFQHTILQIALEC*IASDYGSELTDYASFLSEHTLCPGGHNNDLRADGSD 157 P HTI + L C + Y + L+ +SF S+H + + + G D Sbjct: 73 PRLSHTIPALDLYCAVHRQYSNHLSRTSSFASDHEVSNSNNITTIVDKGDD 123 >At2g25150.1 68415.m03008 transferase family protein similar to 10-deacetylbaccatin III-10-O-acetyl transferase [gi:6746554], 2-debenzoyl-7,13-diacetylbaccatin III-2-O-benzoyl transferase [gi:11559716] from Taxus cuspidata; contains Pfam transferase family domain PF00248; contains EST gb:R65039 Length = 461 Score = 27.9 bits (59), Expect = 7.1 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = -1 Query: 177 LRADGSDPHFHAGVAVLGQLPSEELIEF 94 L+ SDP GV V+ +LP + ++EF Sbjct: 418 LKPSKSDPSMEGGVKVIMKLPRDAMVEF 445 >At1g20130.1 68414.m02518 family II extracellular lipase, putative contains Pfam profile PF00657: GDSL-like Lipase/Acylhydrolase; similar to EXL3 (PMID:11431566) Length = 1006 Score = 27.9 bits (59), Expect = 7.1 Identities = 12/27 (44%), Positives = 12/27 (44%) Frame = +2 Query: 632 PKKPQPDHILVTEPKDEPVPLEPPAKC 712 P KPQP EPK P P P C Sbjct: 72 PPKPQPKPAPPPEPKPAPPPAPKPVPC 98 >At3g17770.1 68416.m02267 dihydroxyacetone kinase family protein contains Pfam domains, PF02733: DAK1 domain and PF02734: DAK2 domain Length = 595 Score = 27.5 bits (58), Expect = 9.4 Identities = 10/24 (41%), Positives = 18/24 (75%) Frame = -3 Query: 541 VDVIIARVSRVIMSPCTNFIDLAR 470 VDV+++ V + I+SP TN++ + R Sbjct: 239 VDVVVSHVLQQILSPETNYVPITR 262 >At2g15590.1 68415.m01785 expressed protein Length = 125 Score = 27.5 bits (58), Expect = 9.4 Identities = 12/34 (35%), Positives = 18/34 (52%) Frame = -1 Query: 309 PPFQHTILQIALEC*IASDYGSELTDYASFLSEH 208 P HTI + L C + Y + L+ +SF S+H Sbjct: 73 PRLSHTIPALDLYCAVHRQYSNHLSRTSSFASDH 106 >At1g56240.1 68414.m06465 SKP1 interacting partner 3-related contains similarity to SKP1 interacting partner 3 GI:10716951 from [Arabidopsis thaliana] Length = 284 Score = 27.5 bits (58), Expect = 9.4 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 4/58 (6%) Frame = +1 Query: 25 LAIMAVNNISKKR--KFVGDGVFKAELNEFLTRELAED--GYSGVEVRVTPIRSEIII 186 + + AV K+R K DG + EL EF+TRE +D S EV+ ++ I+I Sbjct: 216 MTVEAVGGDGKRREPKARDDGWLEIELGEFVTREGEDDEVNMSLTEVKGYQLKGGIVI 273 >At1g51580.1 68414.m05806 KH domain-containing protein Length = 621 Score = 27.5 bits (58), Expect = 9.4 Identities = 12/32 (37%), Positives = 20/32 (62%) Frame = +1 Query: 166 IRSEIIIMATRTQSMLGEKGRIIRELTSVVRS 261 + ++ ATRT +++G+ G +IR L SV S Sbjct: 19 VHFRLLCPATRTGAIIGKGGSVIRHLQSVTGS 50 >At1g44100.1 68414.m05094 amino acid permease 5, putative (AAP5) nearly identical to amino acid permease (AAP5) GI:608673 from [Arabidopsis thaliana] Length = 480 Score = 27.5 bits (58), Expect = 9.4 Identities = 13/39 (33%), Positives = 24/39 (61%) Frame = -2 Query: 302 FSIQFYRLLWNVESLLTTEVSSRIMRPFSPSILCVLVAI 186 F++ +RL+W ++TT + S +M PF ++ +L AI Sbjct: 377 FNLNLFRLVWRTFFVMTTTLISMLM-PFFNDVVGLLGAI 414 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,727,850 Number of Sequences: 28952 Number of extensions: 362102 Number of successful extensions: 1044 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 987 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1044 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1555552968 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -