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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30725
         (717 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g35530.1 68418.m04226 40S ribosomal protein S3 (RPS3C)             150   8e-37
At3g53870.1 68416.m05951 40S ribosomal protein S3 (RPS3B) riboso...   146   1e-35
At2g31610.1 68415.m03862 40S ribosomal protein S3 (RPS3A)             146   1e-35
At3g06190.2 68416.m00712 speckle-type POZ protein-related simila...    37   0.015
At3g06190.1 68416.m00711 speckle-type POZ protein-related simila...    37   0.015
At5g19000.1 68418.m02257 speckle-type POZ protein-related contai...    32   0.33 
At2g41380.1 68415.m05107 embryo-abundant protein-related similar...    30   1.3  
At5g56930.1 68418.m07107 zinc finger (CCCH-type) family protein ...    29   3.1  
At4g36190.1 68417.m05149 serine carboxypeptidase S28 family prot...    29   4.1  
At2g15590.2 68415.m01786 expressed protein                             28   5.4  
At2g25150.1 68415.m03008 transferase family protein similar to 1...    28   7.1  
At1g20130.1 68414.m02518 family II extracellular lipase, putativ...    28   7.1  
At3g17770.1 68416.m02267 dihydroxyacetone kinase family protein ...    27   9.4  
At2g15590.1 68415.m01785 expressed protein                             27   9.4  
At1g56240.1 68414.m06465 SKP1 interacting partner 3-related cont...    27   9.4  
At1g51580.1 68414.m05806 KH domain-containing protein                  27   9.4  
At1g44100.1 68414.m05094 amino acid permease 5, putative (AAP5) ...    27   9.4  

>At5g35530.1 68418.m04226 40S ribosomal protein S3 (RPS3C)
          Length = 248

 Score =  150 bits (364), Expect = 8e-37
 Identities = 70/86 (81%), Positives = 77/86 (89%)
 Frame = +3

Query: 255 QKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARG 434
           QKRF  P+ SVELYAEKVA RGLCAIAQAESLRYKL+GGLAVRRACYGVLRF+MESGA+G
Sbjct: 74  QKRFKFPQDSVELYAEKVANRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKG 133

Query: 435 CEVVVSGKLRGQRAKSMKFVHGLMIT 512
           CEV+VSGKLR  RAKSMKF  G M++
Sbjct: 134 CEVIVSGKLRAARAKSMKFKDGYMVS 159



 Score =  119 bits (287), Expect = 2e-27
 Identities = 60/75 (80%), Positives = 66/75 (88%)
 Frame = +1

Query: 49  ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSMLGEKGR 228
           ISKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP+R+EIII ATRTQ++LGEKGR
Sbjct: 5   ISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGR 64

Query: 229 IIRELTSVVRSDSTF 273
            IRELTS+V+    F
Sbjct: 65  RIRELTSLVQKRFKF 79



 Score = 84.2 bits (199), Expect = 8e-17
 Identities = 35/63 (55%), Positives = 46/63 (73%)
 Frame = +2

Query: 512 SGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVP 691
           SG P  +Y++ A RHVLLRQGVLG+KVKIML WD +GK GP  P PD +++  PK++ V 
Sbjct: 160 SGQPTKEYIDAAVRHVLLRQGVLGLKVKIMLDWDPKGKQGPMTPLPDVVIIHTPKEDDVY 219

Query: 692 LEP 700
           + P
Sbjct: 220 IAP 222


>At3g53870.1 68416.m05951 40S ribosomal protein S3 (RPS3B) ribosomal
           protein S3a - Xenopus laevis, PIR:R3XL3A
          Length = 249

 Score =  146 bits (354), Expect = 1e-35
 Identities = 69/86 (80%), Positives = 75/86 (87%)
 Frame = +3

Query: 255 QKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARG 434
           QKRF  P  SVELYAEKV  RGLCAIAQAESLRYKL+GGLAVRRACYGVLRF+MESGA+G
Sbjct: 74  QKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKG 133

Query: 435 CEVVVSGKLRGQRAKSMKFVHGLMIT 512
           CEV+VSGKLR  RAKSMKF  G M++
Sbjct: 134 CEVIVSGKLRAARAKSMKFKDGYMVS 159



 Score =  119 bits (287), Expect = 2e-27
 Identities = 60/75 (80%), Positives = 66/75 (88%)
 Frame = +1

Query: 49  ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSMLGEKGR 228
           ISKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP+R+EIII ATRTQ++LGEKGR
Sbjct: 5   ISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGR 64

Query: 229 IIRELTSVVRSDSTF 273
            IRELTS+V+    F
Sbjct: 65  RIRELTSLVQKRFKF 79



 Score = 83.8 bits (198), Expect = 1e-16
 Identities = 37/68 (54%), Positives = 50/68 (73%)
 Frame = +2

Query: 512 SGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVP 691
           SG P  +Y+++A RHVLLRQGVLGIKVK+ML WD +G +GPK P PD +++  PK+E   
Sbjct: 160 SGQPTKEYIDSAVRHVLLRQGVLGIKVKVMLDWDPKGISGPKTPLPDVVIIHSPKEEEA- 218

Query: 692 LEPPAKCA 715
           +  PA+ A
Sbjct: 219 IYAPAQVA 226


>At2g31610.1 68415.m03862 40S ribosomal protein S3 (RPS3A)
          Length = 250

 Score =  146 bits (354), Expect = 1e-35
 Identities = 69/86 (80%), Positives = 75/86 (87%)
 Frame = +3

Query: 255 QKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARG 434
           QKRF  P  SVELYAEKV  RGLCAIAQAESLRYKL+GGLAVRRACYGVLRF+MESGA+G
Sbjct: 74  QKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKG 133

Query: 435 CEVVVSGKLRGQRAKSMKFVHGLMIT 512
           CEV+VSGKLR  RAKSMKF  G M++
Sbjct: 134 CEVIVSGKLRAARAKSMKFKDGYMVS 159



 Score =  119 bits (287), Expect = 2e-27
 Identities = 60/75 (80%), Positives = 66/75 (88%)
 Frame = +1

Query: 49  ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSMLGEKGR 228
           ISKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP+R+EIII ATRTQ++LGEKGR
Sbjct: 5   ISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGR 64

Query: 229 IIRELTSVVRSDSTF 273
            IRELTS+V+    F
Sbjct: 65  RIRELTSLVQKRFKF 79



 Score = 87.4 bits (207), Expect = 8e-18
 Identities = 40/68 (58%), Positives = 49/68 (72%)
 Frame = +2

Query: 512 SGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVP 691
           SG P  +Y++ A RHVLLRQGVLGIKVKIML WD  GK+GPK P PD +++  PKD+ V 
Sbjct: 160 SGQPTKEYIDAAVRHVLLRQGVLGIKVKIMLDWDPTGKSGPKTPLPDVVIIHAPKDD-VV 218

Query: 692 LEPPAKCA 715
              PA+ A
Sbjct: 219 YSAPAQAA 226


>At3g06190.2 68416.m00712 speckle-type POZ protein-related similar
           to SPOP (novel nuclear speckle-type protein)
           (SP:O43791)   [Homo sapiens]; contains Pfam PF00651 :
           BTB/POZ domain; contains Pfam PF00917: MATH domain
          Length = 295

 Score = 36.7 bits (81), Expect = 0.015
 Identities = 16/30 (53%), Positives = 20/30 (66%)
 Frame = -1

Query: 246 SELTDYASFLSEHTLCPGGHNNDLRADGSD 157
           SEL +Y + LSEH+L   GH  +L ADG D
Sbjct: 255 SELLEYVARLSEHSLTSSGHRKELFADGCD 284


>At3g06190.1 68416.m00711 speckle-type POZ protein-related similar
           to SPOP (novel nuclear speckle-type protein)
           (SP:O43791)   [Homo sapiens]; contains Pfam PF00651 :
           BTB/POZ domain; contains Pfam PF00917: MATH domain
          Length = 406

 Score = 36.7 bits (81), Expect = 0.015
 Identities = 16/30 (53%), Positives = 20/30 (66%)
 Frame = -1

Query: 246 SELTDYASFLSEHTLCPGGHNNDLRADGSD 157
           SEL +Y + LSEH+L   GH  +L ADG D
Sbjct: 366 SELLEYVARLSEHSLTSSGHRKELFADGCD 395


>At5g19000.1 68418.m02257 speckle-type POZ protein-related contains
           Pfam PF00651 : BTB/POZ domain; contains Pfam PF00917:
           MATH domain; similar to Speckle-type POZ protein
           (SP:O43791) [Homo sapiens]
          Length = 442

 Score = 32.3 bits (70), Expect = 0.33
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -1

Query: 246 SELTDYASFLSEHTLCPGGHNNDLRADGSD 157
           +EL  Y + LSEH++   GH  ++ ADG D
Sbjct: 402 TELLQYVARLSEHSVIVSGHRKEIFADGCD 431


>At2g41380.1 68415.m05107 embryo-abundant protein-related similar to
           embryo-abundant protein [Picea glauca] GI:1350531
          Length = 269

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
 Frame = +1

Query: 109 LTRELAEDGYSGVEVRVTPIRSEIIIMATRTQS----MLGEKGRIIRELTSVVRSDSTFQ 276
           L R L EDGY G+E     + ++    +T +QS     + EK  +  E  + +RS S +Q
Sbjct: 165 LARRLVEDGYRGIEFPFEKVDND---ESTESQSFPVRFVTEKEMVFEEYMTYLRSSSAYQ 221

Query: 277 S 279
           +
Sbjct: 222 T 222


>At5g56930.1 68418.m07107 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 675

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 20/73 (27%), Positives = 31/73 (42%)
 Frame = +2

Query: 320 PLRYRPGRISKIQAYRRSRCTSCLLWCSPFHHGIWCPWL*SCCIWQAAWSTCQINEVCTW 499
           P+  +P  I   + Y + RC      C   H  I       CC +  A  +C   + C +
Sbjct: 345 PVAPKPKPIKYCRHYLKGRCHEGDK-CKFSHDTIPETKCSPCCYF--ATQSCMKGDDCPF 401

Query: 500 THDHSGDPCNDYV 538
            HD S  PCN+++
Sbjct: 402 DHDLSKYPCNNFI 414


>At4g36190.1 68417.m05149 serine carboxypeptidase S28 family protein
           contains Pfam PF05577: Serine carboxypeptidase S28
          Length = 493

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +2

Query: 50  FQRSENLLEMGFSRQNSMSSSLGSWPRTATPAWKCGSLPSA 172
           F RS N+    F    S S +L +W R   P   CGSL S+
Sbjct: 161 FNRSSNVENPWFFFGVSYSGALSAWFRLKFPHLTCGSLASS 201


>At2g15590.2 68415.m01786 expressed protein 
          Length = 155

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = -1

Query: 309 PPFQHTILQIALEC*IASDYGSELTDYASFLSEHTLCPGGHNNDLRADGSD 157
           P   HTI  + L C +   Y + L+  +SF S+H +    +   +   G D
Sbjct: 73  PRLSHTIPALDLYCAVHRQYSNHLSRTSSFASDHEVSNSNNITTIVDKGDD 123


>At2g25150.1 68415.m03008 transferase family protein similar to
           10-deacetylbaccatin III-10-O-acetyl transferase
           [gi:6746554], 2-debenzoyl-7,13-diacetylbaccatin
           III-2-O-benzoyl transferase [gi:11559716] from Taxus
           cuspidata; contains Pfam transferase family domain
           PF00248; contains EST gb:R65039
          Length = 461

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 177 LRADGSDPHFHAGVAVLGQLPSEELIEF 94
           L+   SDP    GV V+ +LP + ++EF
Sbjct: 418 LKPSKSDPSMEGGVKVIMKLPRDAMVEF 445


>At1g20130.1 68414.m02518 family II extracellular lipase, putative
           contains Pfam profile PF00657: GDSL-like
           Lipase/Acylhydrolase; similar to EXL3 (PMID:11431566)
          Length = 1006

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = +2

Query: 632 PKKPQPDHILVTEPKDEPVPLEPPAKC 712
           P KPQP      EPK  P P   P  C
Sbjct: 72  PPKPQPKPAPPPEPKPAPPPAPKPVPC 98


>At3g17770.1 68416.m02267 dihydroxyacetone kinase family protein
           contains Pfam domains, PF02733: DAK1 domain and PF02734:
           DAK2 domain
          Length = 595

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = -3

Query: 541 VDVIIARVSRVIMSPCTNFIDLAR 470
           VDV+++ V + I+SP TN++ + R
Sbjct: 239 VDVVVSHVLQQILSPETNYVPITR 262


>At2g15590.1 68415.m01785 expressed protein 
          Length = 125

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 309 PPFQHTILQIALEC*IASDYGSELTDYASFLSEH 208
           P   HTI  + L C +   Y + L+  +SF S+H
Sbjct: 73  PRLSHTIPALDLYCAVHRQYSNHLSRTSSFASDH 106


>At1g56240.1 68414.m06465 SKP1 interacting partner 3-related
           contains similarity to SKP1 interacting partner 3
           GI:10716951 from [Arabidopsis thaliana]
          Length = 284

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
 Frame = +1

Query: 25  LAIMAVNNISKKR--KFVGDGVFKAELNEFLTRELAED--GYSGVEVRVTPIRSEIII 186
           + + AV    K+R  K   DG  + EL EF+TRE  +D    S  EV+   ++  I+I
Sbjct: 216 MTVEAVGGDGKRREPKARDDGWLEIELGEFVTREGEDDEVNMSLTEVKGYQLKGGIVI 273


>At1g51580.1 68414.m05806 KH domain-containing protein
          Length = 621

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 166 IRSEIIIMATRTQSMLGEKGRIIRELTSVVRS 261
           +   ++  ATRT +++G+ G +IR L SV  S
Sbjct: 19  VHFRLLCPATRTGAIIGKGGSVIRHLQSVTGS 50


>At1g44100.1 68414.m05094 amino acid permease 5, putative (AAP5)
           nearly identical to amino acid permease (AAP5) GI:608673
           from [Arabidopsis thaliana]
          Length = 480

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = -2

Query: 302 FSIQFYRLLWNVESLLTTEVSSRIMRPFSPSILCVLVAI 186
           F++  +RL+W    ++TT + S +M PF   ++ +L AI
Sbjct: 377 FNLNLFRLVWRTFFVMTTTLISMLM-PFFNDVVGLLGAI 414


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,727,850
Number of Sequences: 28952
Number of extensions: 362102
Number of successful extensions: 1044
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1044
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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