Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30724
(643 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55237| Best HMM Match : Serpin (HMM E-Value=0) 43 2e-04
SB_38975| Best HMM Match : Serpin (HMM E-Value=0) 41 0.001
SB_55238| Best HMM Match : Serpin (HMM E-Value=0) 38 0.009
SB_27848| Best HMM Match : zf-C2H2 (HMM E-Value=1.49995e-41) 29 3.2
SB_55414| Best HMM Match : 7tm_1 (HMM E-Value=4.3e-08) 29 4.2
SB_4415| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_27683| Best HMM Match : Exo_endo_phos (HMM E-Value=1.5e-20) 28 7.4
SB_24891| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_11238| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_48263| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_29987| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_48559| Best HMM Match : Peptidase_A17 (HMM E-Value=2e-38) 27 9.8
SB_22843| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
SB_5257| Best HMM Match : SlyX (HMM E-Value=2.2) 27 9.8
SB_49672| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
>SB_55237| Best HMM Match : Serpin (HMM E-Value=0)
Length = 363
Score = 43.2 bits (97), Expect = 2e-04
Identities = 18/44 (40%), Positives = 27/44 (61%)
Frame = +2
Query: 509 IKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFYV 640
IK+L+ ++S T ++VNA+YFKG W +F E T F+V
Sbjct: 113 IKELIPHGVINSLTRLIIVNAVYFKGVWKKEFGEENTFHAAFFV 156
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/54 (31%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Frame = +3
Query: 336 ELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDF-SKNTVAAKSINDWVEE 494
E+++ NK++ HD ++ E F +R+ ++S++ +DF +K A K +N WV +
Sbjct: 54 EIQLVNKIWGHDEFEILEEFLHGTREFYHSEMAQVDFVNKAFDARKEVNAWVHQ 107
>SB_38975| Best HMM Match : Serpin (HMM E-Value=0)
Length = 380
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/78 (25%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Frame = +3
Query: 264 FPDDDAIRTEFASKSRDLRSIKGVELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNID 443
FP D + ++ + + G ++ MAN+++ G ++ E F S++ F++++ +D
Sbjct: 62 FPTDVPEKFHDFLQALNASNSDGNQILMANRLFAQMGFEILEEFKKASKESFSAEMALVD 121
Query: 444 FSKNTVAAK-SINDWVEE 494
+ KN+ A+ ++N WVE+
Sbjct: 122 YVKNSNGARDTVNRWVEQ 139
Score = 37.1 bits (82), Expect = 0.012
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +2
Query: 509 IKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDF 634
IK+L+ + T LVNA+YFKG+W F+ T F
Sbjct: 145 IKNLIPEGMFNKDTILCLVNAVYFKGSWMKHFNRNATQSGKF 186
>SB_55238| Best HMM Match : Serpin (HMM E-Value=0)
Length = 345
Score = 37.5 bits (83), Expect = 0.009
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = +2
Query: 509 IKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDF 634
I DL+ P + T LVNAIYFKG W F + + +F
Sbjct: 108 ICDLIAPGVFNMLTRLTLVNAIYFKGMWDKPFKKEHSHSSEF 149
Score = 32.7 bits (71), Expect = 0.26
Identities = 13/54 (24%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +3
Query: 336 ELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDFSKNTVAA-KSINDWVEE 494
E+ +AN +++ + + F + + +++D+ +D+ + A K +N WVEE
Sbjct: 49 EMSIANNLFLQKDFSILKEFTDICQKYYDADISLVDYKTDFEGARKHVNQWVEE 102
>SB_27848| Best HMM Match : zf-C2H2 (HMM E-Value=1.49995e-41)
Length = 257
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 388 RILQSFPGTSSIRTSKTLISRRIQSQLS 471
R+ SFPG S TL++R QSQ+S
Sbjct: 65 RLYDSFPGASRSEAESTLLARMRQSQVS 92
>SB_55414| Best HMM Match : 7tm_1 (HMM E-Value=4.3e-08)
Length = 595
Score = 28.7 bits (61), Expect = 4.2
Identities = 17/56 (30%), Positives = 31/56 (55%)
Frame = +1
Query: 64 AMAAVTNLSNVLKNGNDNFTARMFTEVVKNNPGKSVVLSAFSVLPPLAQLALASDG 231
+MAAV + +L+ + + + ++KNN +S+ AF+ L L L L+S+G
Sbjct: 36 SMAAVCRPAGLLEPDHFALPVAVESLILKNNSIRSIAKGAFNGLDKLLTLDLSSNG 91
>SB_4415| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 640
Score = 28.7 bits (61), Expect = 4.2
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -2
Query: 72 CHCRDGDSKQTNDCL 28
CHCRDG+S Q N+ +
Sbjct: 336 CHCRDGESVQVNNAM 350
>SB_27683| Best HMM Match : Exo_endo_phos (HMM E-Value=1.5e-20)
Length = 672
Score = 27.9 bits (59), Expect = 7.4
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 229 HQKLKLTEREEAAPKMPRGQRFSL 158
HQ L + E + ++PK PR +F L
Sbjct: 56 HQNLSINEMDSSSPKRPRQHQFGL 79
>SB_24891| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 345
Score = 27.9 bits (59), Expect = 7.4
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 229 HQKLKLTEREEAAPKMPRGQRFSL 158
HQ L + E + ++PK PR +F L
Sbjct: 21 HQNLSINEMDSSSPKRPRQHQFGL 44
>SB_11238| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 99
Score = 27.9 bits (59), Expect = 7.4
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 229 HQKLKLTEREEAAPKMPRGQRFSL 158
HQ L + E + ++PK PR +F L
Sbjct: 50 HQNLSINEMDSSSPKRPRQHQFGL 73
>SB_48263| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 132
Score = 27.9 bits (59), Expect = 7.4
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 229 HQKLKLTEREEAAPKMPRGQRFSL 158
HQ L + E + ++PK PR +F L
Sbjct: 21 HQNLSINEMDSSSPKRPRQHQFGL 44
>SB_29987| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 118
Score = 27.9 bits (59), Expect = 7.4
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 229 HQKLKLTEREEAAPKMPRGQRFSL 158
HQ L + E + ++PK PR +F L
Sbjct: 7 HQNLSINEMDSSSPKCPRQHQFGL 30
>SB_48559| Best HMM Match : Peptidase_A17 (HMM E-Value=2e-38)
Length = 1541
Score = 27.5 bits (58), Expect = 9.8
Identities = 8/22 (36%), Positives = 16/22 (72%)
Frame = +2
Query: 371 WWKTRREFCSRFQGRLQFGRPK 436
W + RRE+C++ Q R ++ +P+
Sbjct: 1275 WLRWRREYCTQLQSRQKWNKPQ 1296
>SB_22843| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1138
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = +1
Query: 190 VLPPLAQLALASDGETHEELLKLSASLTTMLYEQNSRV 303
+LPPLA L +++G T L++ + +++ +Y NS V
Sbjct: 993 ILPPLASLVSSTNGNTRMLCLRMFSDVSS-IYLDNSNV 1029
>SB_5257| Best HMM Match : SlyX (HMM E-Value=2.2)
Length = 641
Score = 27.5 bits (58), Expect = 9.8
Identities = 20/83 (24%), Positives = 40/83 (48%)
Frame = +3
Query: 246 AFEAIGFPDDDAIRTEFASKSRDLRSIKGVELKMANKVYVHDGGKLDENFAVVSRDVFNS 425
AF F DD + E S+++D +++ K + K +E+ + S +F+
Sbjct: 420 AFPRFYFLSDDEL-LEILSQTKDPTAVQPHLRKCFENIAKL---KFEEDLRISS--MFSG 473
Query: 426 DVQNIDFSKNTVAAKSINDWVEE 494
+ +N+DFS + ++ DW+ E
Sbjct: 474 EGENVDFSTDLYPTGNVEDWLLE 496
>SB_49672| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 132
Score = 27.5 bits (58), Expect = 9.8
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -1
Query: 229 HQKLKLTEREEAAPKMPRGQRF 164
H+ L + ER+ ++PK PR +F
Sbjct: 21 HENLSINERDSSSPKRPRQHQF 42
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,257,786
Number of Sequences: 59808
Number of extensions: 350903
Number of successful extensions: 1116
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1116
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -