Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30723
         (716 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0606 + 24297392-24299241,24299424-24299484,24299626-24300087     28   6.4  
10_08_0008 - 14046647-14047462,14050744-14051499                       28   8.5  
01_01_1089 - 8560008-8560220,8560456-8560977,8561095-8561283,856...    28   8.5  

>02_04_0606 + 24297392-24299241,24299424-24299484,24299626-24300087
          Length = 790

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/55 (25%), Positives = 28/55 (50%)
 Frame = +1

Query: 508 LDSKINEQPSIQYIIQLKESGRTIQAANMAFQLANVEASKNASPLRIKKLYILAG 672
           LD+   +  S+QY +++ +    I+     + L +V+AS+       KK+ +L G
Sbjct: 96  LDAAQKQAASLQYEVRMLQKELEIRGQEREYDLQSVDASRRQQAESQKKIALLEG 150


>10_08_0008 - 14046647-14047462,14050744-14051499
          Length = 523

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = -2

Query: 556 VVLYTVWRAAHLFYCPEFSVILF*FCILCGSR 461
           VVL  V+RA    Y P+F + L  FCI  G R
Sbjct: 378 VVLKRVFRADVKAYLPDFKLALDHFCIHAGGR 409


>01_01_1089 -
           8560008-8560220,8560456-8560977,8561095-8561283,
           8561377-8561642,8561967-8562111,8562411-8562530,
           8562611-8562930,8564161-8564341,8564434-8564580,
           8565186-8565497,8566303-8566450,8566592-8566765,
           8567385-8567446,8567499-8567571,8567628-8567683,
           8568370-8568645,8569541-8569588,8569870-8569991,
           8570258-8570413,8571037-8571079,8572624-8572701,
           8572972-8573070,8573168-8573209,8573302-8573304
          Length = 1264

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +2

Query: 425 DNESLSKLFISSPRTAKDTKLKQNDAEL 508
           D+ESLS  + S P TA D  LK +  EL
Sbjct: 468 DSESLSTKYCSGPNTAADAGLKPDVYEL 495


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,682,495
Number of Sequences: 37544
Number of extensions: 366730
Number of successful extensions: 738
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)