Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30723
         (716 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50909| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.10 
SB_52567| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     29   2.8  
SB_54333| Best HMM Match : Glyco_hydro_39 (HMM E-Value=0)              29   5.0  
SB_22944| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  

>SB_50909| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 68

 Score = 34.3 bits (75), Expect = 0.10
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = +1

Query: 547 IIQLKESGRTIQAANMAFQLANVEASKNASPLRIKKLYILAGHL 678
           +++ +++   I AA + F+LA        +P+R KKLY+LA  L
Sbjct: 25  VLRYRKANHFIDAAKLLFKLAKETCDPRTNPMRGKKLYVLAALL 68


>SB_52567| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 370

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = +1

Query: 523 NEQPSIQYIIQLKESGRTIQAANMAFQLANVEASKNASPLRIKK 654
           N +P++++   +++      AAN+ F     +AS+ ASP  I +
Sbjct: 154 NLEPALKFTSNIQKPNNQTPAANIGFDSKKQQASRKASPANISQ 197


>SB_54333| Best HMM Match : Glyco_hydro_39 (HMM E-Value=0)
          Length = 1325

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +1

Query: 157 YFKDFDAAEKIYLNEDR-RDLAIALRKRLG 243
           +FKDFD AE+IY   D  + LA+ L +R G
Sbjct: 70  FFKDFDDAEEIYAWRDMVKALAVHLIERYG 99


>SB_22944| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2468

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 17/67 (25%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
 Frame = +1

Query: 460 SENRKGYKIK-TK*R*TLDSKINEQPSIQYIIQLKESGRTIQAANMAFQLANVEASKNAS 636
           +   +G++++ T+    L     E   ++Y+I +K+SG+ + A +     ++  +S  AS
Sbjct: 92  TNGERGHEVQLTEENEILKLAFKEIERLKYMISVKQSGKEMDAKSERSYRSSRSSSSRAS 151

Query: 637 PLRIKKL 657
             RIK L
Sbjct: 152 SARIKAL 158


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,837,446
Number of Sequences: 59808
Number of extensions: 441418
Number of successful extensions: 963
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 963
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)