Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30723
         (716 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40410-5|AAA81394.3| 1199|Caenorhabditis elegans Hypothetical pr...    57   1e-08
Z81489-1|CAB04005.2|  266|Caenorhabditis elegans Hypothetical pr...    29   4.4  
U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein ...    28   7.7  
AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.    28   7.7  
AC006708-10|AAF60430.2| 1250|Caenorhabditis elegans Hypothetical...    28   7.7  

>U40410-5|AAA81394.3| 1199|Caenorhabditis elegans Hypothetical
           protein C54G7.4 protein.
          Length = 1199

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 25/62 (40%), Positives = 40/62 (64%)
 Frame = +1

Query: 64  FVRRNDYAGIKFVSRLNALHSSALKKAEIMAYFKDFDAAEKIYLNEDRRDLAIALRKRLG 243
           FV+  DYAG++ V +L  + S+ L+ AEI AY    + A+  +L  DRRDLA+ + K++G
Sbjct: 727 FVKLGDYAGVQLVKKLRNIQSNDLRNAEIYAYRDTLEEAKTAFLQADRRDLAVEMYKKVG 786

Query: 244 HW 249
            +
Sbjct: 787 DY 788



 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = +1

Query: 523  NEQPSIQYIIQLKESGRTIQAANMAFQLANVEASKNASPLRIKKLYILAGHL 678
            +++ S+  +     +GR + AA +AF +A    SK      +K+ Y+L   L
Sbjct: 933  SDEKSLSALALYMRAGRHLDAAKIAFDIAKDRKSKYVPYEELKQCYVLGAVL 984


>Z81489-1|CAB04005.2|  266|Caenorhabditis elegans Hypothetical
           protein C55A1.1 protein.
          Length = 266

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/47 (31%), Positives = 28/47 (59%)
 Frame = -2

Query: 373 IVFQSTAPILSINVEVPILT*ACLMCASVVFADIFKSSTTETNVPNV 233
           +VFQ+T P++ +++ V +L   C+   ++VF D F  +TT    P +
Sbjct: 212 LVFQATVPLILMHIPVTVLYTCCVF--NIVF-DTFSVATTIALFPAI 255


>U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein 418
            protein.
          Length = 1829

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 18/43 (41%), Positives = 22/43 (51%)
 Frame = +2

Query: 581  RLLIWRFSWLMSKLQKMHHLCE*RSYTYWRVTCTIKTQERQGA 709
            R+LI  FS +   L  M  LCE   Y Y R+  +I  Q RQ A
Sbjct: 944  RVLI--FSQMTRMLDIMEDLCEYEGYRYERIDGSIMGQMRQDA 984


>AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.
          Length = 1829

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 18/43 (41%), Positives = 22/43 (51%)
 Frame = +2

Query: 581  RLLIWRFSWLMSKLQKMHHLCE*RSYTYWRVTCTIKTQERQGA 709
            R+LI  FS +   L  M  LCE   Y Y R+  +I  Q RQ A
Sbjct: 944  RVLI--FSQMTRMLDIMEDLCEYEGYRYERIDGSIMGQMRQDA 984


>AC006708-10|AAF60430.2| 1250|Caenorhabditis elegans Hypothetical
            protein Y110A7A.16 protein.
          Length = 1250

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 5/93 (5%)
 Frame = +2

Query: 347  NWSGALEYYKMSNNTEGLKKCYMALEDNESLSKLFISSPRTAKDT-KLKQNDAELWTVK* 523
            +W  A  +Y++S N+E   KC+    D + L+    S+ R A D  KLK +  ++ T   
Sbjct: 941  HWREAALFYELSGNSEKTLKCWEMSRDVDGLA---ASARRLAVDAGKLKIHAIKMSTTLR 997

Query: 524  MSSPPYSI*YNLKRV----VELFRLLIWRFSWL 610
             +  P  +   LK       ++  +L   F WL
Sbjct: 998  EARQPKELAKALKLAGSSSTQIVHVLCDAFEWL 1030


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,396,577
Number of Sequences: 27780
Number of extensions: 344270
Number of successful extensions: 755
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)