Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30723
         (716 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    25   0.54 
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   2.9  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   6.7  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   8.8  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 25.4 bits (53), Expect = 0.54
 Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
 Frame = +2

Query: 317  QYWDFYIDRQNWSGALEY-YKMSNNTEGLKKCYMALEDNESLSKLFISSPRTAKDTKLKQ 493
            + W+  ID +  +  L Y + M N        YM LE  E    +  S+   +K      
Sbjct: 1091 EMWEL-IDTEKLTDRLPYPWTMDNERYVKVDMYMNLE-GEQKDPVIFSTSFDSKVMTRPD 1148

Query: 494  NDAELWTVK*MSSPP 538
             D+E WT K M+  P
Sbjct: 1149 TDSENWTPKMMAVEP 1163


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -2

Query: 547 YTVWRAAHLFYCPEFSVILF*FCILCGSRR 458
           Y ++     FY P F +I   + I C +RR
Sbjct: 202 YQIYATLGSFYIPLFVMIQVYYKIFCAARR 231


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +2

Query: 41  ASKRPKLRLLGEMITQELNLCRD*MHYIPVPL-RKPK*WHISKT 169
           A+ +P  R  GE   QEL   +  +  +P+PL R P     S T
Sbjct: 536 AAGQPSKRNGGETNKQELKRLKSTVSLLPLPLARTPSVMSASST 579


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 495 FCFNFVSFAVLGELMNNL 442
           F F+ V+F +LG  +NNL
Sbjct: 394 FNFDEVNFRILGANVNNL 411


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,153
Number of Sequences: 438
Number of extensions: 4123
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)