Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30723
         (716 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g02640.1 68415.m00203 DC1 domain-containing protein   contain...    29   3.1  
At2g02610.1 68415.m00200 DC1 domain-containing protein   contain...    29   3.1  
At5g40270.1 68418.m04885 metal-dependent phosphohydrolase HD dom...    28   7.1  
At1g49450.1 68414.m05543 transducin family protein / WD-40 repea...    27   9.4  

>At2g02640.1 68415.m00203 DC1 domain-containing protein   contains
           Pfam profile PF03107: DC1 domain
          Length = 627

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -2

Query: 607 PTETPY*QPE*FDHSL*VVLYTVWRAAHLFYCPEFSVILF*FCILCGS 464
           P E  Y  P    HSL  + Y+ +R  H  YC + +  +  FC LC S
Sbjct: 149 PLEISY--PTHTKHSL-QLFYSKYRFDHCIYCRKRATYMIYFCALCDS 193


>At2g02610.1 68415.m00200 DC1 domain-containing protein   contains
           Pfam profile PF03107: DC1 domain
          Length = 627

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -2

Query: 607 PTETPY*QPE*FDHSL*VVLYTVWRAAHLFYCPEFSVILF*FCILCGS 464
           P E  Y  P    HSL  + Y+ +R  H  YC + +  +  FC LC S
Sbjct: 149 PLEISY--PTHTKHSL-QLFYSKYRFDHCIYCRKRATYMIYFCALCDS 193


>At5g40270.1 68418.m04885 metal-dependent phosphohydrolase HD
           domain-containing protein similar to SP|Q60710
           Interferon-gamma inducible protein MG11 {Mus musculus};
           contains Pfam profile PF01966: HD domain
          Length = 473

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +1

Query: 145 EIMAYFKDFDAAEKIYLNEDR 207
           E + ++KD+D+AEK  + EDR
Sbjct: 396 ECINFYKDYDSAEKFVIPEDR 416


>At1g49450.1 68414.m05543 transducin family protein / WD-40 repeat
           family protein contains 7 WD-40 repeats (PF00400);
           similar to En/Spm-like transposon protein GI:2739374
           from [Arabidopsis thaliana]; no characterized homologs
          Length = 471

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
 Frame = -1

Query: 443 WKVIHYPLMP--CNISSILLCYWTFYSIPKHRSNFVYQCRSPNIDVGLFNVCIGGVRR 276
           W   +YP      + SS+    W     P H+S ++YQ R+ + +    N  IG V R
Sbjct: 75  WNQTYYPSNDNTTSFSSVTQSPWNQTYSPYHKSPWIYQTRNSDFEDDPDNGLIGTVVR 132


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,297,617
Number of Sequences: 28952
Number of extensions: 312225
Number of successful extensions: 693
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)