Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30721
         (615 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20293| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_6509| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.1  

>SB_20293| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1821

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 20/67 (29%), Positives = 35/67 (52%)
 Frame = +3

Query: 306  FTIDKADAVNKIV*KSRYFNQIKEIYYISLMSS**LIYESRHLWLVAVSRKTVSSDFGPQ 485
            F +D+   + ++   SR+F ++KE+  IS  +   +I   + L+      + V SD GPQ
Sbjct: 1672 FELDRKTYIIEVDYTSRWF-EVKELRSISSSA---VIKVLQELFATNSIPQVVMSDKGPQ 1727

Query: 486  MTSHEIN 506
              SHE +
Sbjct: 1728 YASHEFS 1734


>SB_6509| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 144

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/49 (28%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
 Frame = -3

Query: 286 CHKSNFICIGTDPILVA*DLRIRLKTSKFQKSKVVT-DMG*AKIAFNHQ 143
           C K + I +G+D +L+   ++++  + +F + ++ T   G  KIAFN +
Sbjct: 22  CEKEDSINLGSDVLLIFKSIKVQPFSDEFGEFRMFTAKKGRLKIAFNEK 70


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,246,658
Number of Sequences: 59808
Number of extensions: 321694
Number of successful extensions: 443
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)