Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30720
(645 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 129 3e-31
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 124 8e-30
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 31 0.11
SPBC3B9.07c |rpa43|rpa21|DNA-directed RNA polymerase I complex s... 28 1.3
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 27 3.1
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 26 4.0
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc... 26 5.3
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2... 26 5.3
SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase Byr2... 25 9.3
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 25 9.3
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 129 bits (312), Expect = 3e-31
Identities = 64/87 (73%), Positives = 70/87 (80%)
Frame = +2
Query: 248 CVLISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQP 427
CV ISSRP+G RAVLKFAAHTGAT IAGRFTPG FTN I +REPRL+IV DP D Q
Sbjct: 78 CV-ISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTDPRADAQA 136
Query: 428 ITEASYVNIPVIALCNTDSPLRFVDIA 508
I EAS+VNIPVIALC+TDS L VD+A
Sbjct: 137 IKEASFVNIPVIALCDTDSILNHVDVA 163
Score = 93.1 bits (221), Expect = 3e-20
Identities = 39/68 (57%), Positives = 54/68 (79%)
Frame = +3
Query: 48 VLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVV 227
VL ++D+ +LAA +H+G++N+ +ME YV+KRR+DG H+INL +TWEKLVLAAR +
Sbjct: 10 VLNATDDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIA 69
Query: 228 AIENPADV 251
IENPADV
Sbjct: 70 TIENPADV 77
Score = 61.7 bits (143), Expect = 9e-11
Identities = 27/45 (60%), Positives = 33/45 (73%)
Frame = +1
Query: 511 PCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRE 645
P N K SIGL W+LLAREVLRLRG + R W+V+ DL+FYR+
Sbjct: 165 PINNKGYKSIGLAWYLLAREVLRLRGNISRTTAWEVMPDLYFYRD 209
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 124 bits (300), Expect = 8e-30
Identities = 61/87 (70%), Positives = 69/87 (79%)
Frame = +2
Query: 248 CVLISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQP 427
CV +S+R +G RAVLKFAAHTGAT IAGRFTPG FTN I +REPRL++V DP D Q
Sbjct: 77 CV-VSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIVVTDPRADAQA 135
Query: 428 ITEASYVNIPVIALCNTDSPLRFVDIA 508
I EAS+VNIPVIALC+TDS L VDIA
Sbjct: 136 IKEASFVNIPVIALCDTDSILNHVDIA 162
Score = 93.1 bits (221), Expect = 3e-20
Identities = 38/72 (52%), Positives = 56/72 (77%)
Frame = +3
Query: 36 GGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAA 215
G ++L +ED+ ++LAA H+G++N+ +M+ YV+KRR+DG H++NL +TWEKLVLAA
Sbjct: 5 GRPNILNATDEDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAA 64
Query: 216 RAVVAIENPADV 251
R + IENPADV
Sbjct: 65 RVIATIENPADV 76
Score = 65.3 bits (152), Expect = 7e-12
Identities = 28/45 (62%), Positives = 34/45 (75%)
Frame = +1
Query: 511 PCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRE 645
P N K SIGL+W+LLAREVLR+RG L R WDV+ DL+FYR+
Sbjct: 164 PTNNKGRKSIGLIWYLLAREVLRVRGTLSRSAPWDVMPDLYFYRD 208
>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
S2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 31.5 bits (68), Expect = 0.11
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +2
Query: 383 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFV 499
P L+++L+P ++ EA ++P I + +TD+ R V
Sbjct: 180 PDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMV 218
>SPBC3B9.07c |rpa43|rpa21|DNA-directed RNA polymerase I complex
subunit Rpa43|Schizosaccharomyces pombe|chr 2|||Manual
Length = 173
Score = 27.9 bits (59), Expect = 1.3
Identities = 21/81 (25%), Positives = 39/81 (48%)
Frame = -2
Query: 287 QHADRRAVMR*EHISGVLDGYDSTSSQNKFFPGTTQVDHMGTISTSFVDIGLHLEVNIFC 108
+H D + + I+G++ YD+ +F + +V + + F I + ++V +F
Sbjct: 31 EHMDSMILSKLPRINGIVLAYDNI----RFLEKSAKVMY----DSPFSFIWVRVDVLVFS 82
Query: 107 PKMGGCSKHFGDIFLVEGEHV 45
PK G C + G I LV H+
Sbjct: 83 PKKGDCLE--GKINLVSPSHI 101
>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 662
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +2
Query: 185 SYLGKTCSGCSCCRSHREPR*CVLISSRPFGQRAVLKFAAH 307
++L K S + R REP C+L+ S P + V+ + H
Sbjct: 464 NFLKKIASARNAAR--REPINCILLDSNPLSLKGVITMSKH 502
>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 26.2 bits (55), Expect = 4.0
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 538 IGLMWWLLAREVLRLRGVLPRDQRWD 615
IGL W L REV R + + R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390
>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 630
Score = 25.8 bits (54), Expect = 5.3
Identities = 6/29 (20%), Positives = 18/29 (62%)
Frame = -1
Query: 267 RDEMRTHQRGSRWLRQHEQPEQVFPRYDA 181
+ R H++ + W ++HE+P+ + +++
Sbjct: 567 KQSWRFHKKYTTWFQRHEEPKMITDEFES 595
>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 474
Score = 25.8 bits (54), Expect = 5.3
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = -3
Query: 433 SNGLMVLCRVQYNQETRFTECSLNLVSKSTWCETPRNRRSTGVRGKLQYSTLTEGP 266
S GL L R + E F + +S + W T + + G+RG ++ EGP
Sbjct: 169 SEGLEDLIRAE--AEKYFAKADCVCISDTYWLGTKKPVLTYGLRGVCYFNITVEGP 222
>SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase
Byr2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 659
Score = 25.0 bits (52), Expect = 9.3
Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = -2
Query: 179 VDHMGTISTSFVDIGLHLEVNIFCPKMGGCSKHF-GDIFLVEGEHV*SSRH 30
VD+ G I S I LE+N K GG F G F + E V + H
Sbjct: 530 VDNKGKIKISDFGISKKLELNSTSTKTGGARPSFQGSSFWMAPEVVKQTMH 580
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 25.0 bits (52), Expect = 9.3
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +1
Query: 139 MSTNDVLMVPM*STCVVPGKNLFWLLVL 222
M+ N V + + T PG N FW L++
Sbjct: 920 MTLNPVFQIGLNGTTHSPGNNSFWPLII 947
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,987,618
Number of Sequences: 5004
Number of extensions: 67276
Number of successful extensions: 155
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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