Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30720
(645 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 126 2e-29
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 126 2e-29
11_06_0458 + 23808402-23808469,23808800-23809684,23810011-238119... 29 4.2
06_03_0543 + 21967787-21970261 29 4.2
04_04_1176 + 31494318-31495685 29 4.2
01_06_0364 - 28749825-28750053,28750442-28750621,28751018-287511... 29 4.2
01_06_0902 + 32853708-32853739,32854787-32855596,32856094-328561... 28 5.5
01_01_0703 - 5425713-5425862,5426302-5426451,5426853-5426964,542... 28 5.5
12_01_1093 - 11374087-11374140,11374337-11374438,11375793-113758... 28 7.3
06_03_0424 - 20648938-20649564,20650588-20650902 28 7.3
01_06_0575 - 30357556-30357582,30357698-30357944,30358039-303581... 28 7.3
05_02_0051 - 6110320-6110375,6110554-6110696,6111011-6111124,611... 27 9.7
03_02_0792 + 11236785-11237337,11237711-11238261,11238446-112386... 27 9.7
01_07_0027 - 40578075-40578437,40578647-40578767,40578852-405789... 27 9.7
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 126 bits (304), Expect = 2e-29
Identities = 57/89 (64%), Positives = 71/89 (79%)
Frame = +2
Query: 239 PR*CVLISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 418
P+ ++ S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ DP D
Sbjct: 75 PQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTD 134
Query: 419 HQPITEASYVNIPVIALCNTDSPLRFVDI 505
HQPI E++ NIP IA C+TDSP+R+VDI
Sbjct: 135 HQPIKESALGNIPTIAFCDTDSPMRYVDI 163
Score = 95.5 bits (227), Expect = 3e-20
Identities = 42/67 (62%), Positives = 52/67 (77%)
Frame = +3
Query: 51 LALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVA 230
L+ E+D+ MLAA HLG +N +FQME YVYKRR DG ++INL +TWEKL LAAR +VA
Sbjct: 12 LSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVA 71
Query: 231 IENPADV 251
IENP D+
Sbjct: 72 IENPQDI 78
Score = 61.3 bits (142), Expect = 6e-10
Identities = 25/45 (55%), Positives = 33/45 (73%)
Frame = +1
Query: 511 PCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRE 645
P N K SIG ++WLLAR VL++RG + +WDV+VDLFFYR+
Sbjct: 166 PANNKGKQSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRD 210
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 126 bits (304), Expect = 2e-29
Identities = 57/89 (64%), Positives = 71/89 (79%)
Frame = +2
Query: 239 PR*CVLISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 418
P+ ++ S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ DP D
Sbjct: 75 PQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTD 134
Query: 419 HQPITEASYVNIPVIALCNTDSPLRFVDI 505
HQPI E++ NIP IA C+TDSP+R+VDI
Sbjct: 135 HQPIKESALGNIPTIAFCDTDSPMRYVDI 163
Score = 98.7 bits (235), Expect = 3e-21
Identities = 45/78 (57%), Positives = 57/78 (73%)
Frame = +3
Query: 18 ISATMSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWE 197
++A G L+ E+DV MLAA HLG +N +FQME YVYKRR+DG ++INL +TWE
Sbjct: 1 MAAVAGGAARALSQAEQDVQMMLAADVHLGTKNCDFQMERYVYKRRSDGIYIINLGKTWE 60
Query: 198 KLVLAARAVVAIENPADV 251
KL LAAR +VAIENP D+
Sbjct: 61 KLQLAARVIVAIENPQDI 78
Score = 61.3 bits (142), Expect = 6e-10
Identities = 25/45 (55%), Positives = 34/45 (75%)
Frame = +1
Query: 511 PCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRE 645
P N K +SIG ++WLLAR VL++RG + +WDV+VDLFFYR+
Sbjct: 166 PANNKGRNSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRD 210
>11_06_0458 + 23808402-23808469,23808800-23809684,23810011-23811961,
23812210-23812285,23813064-23813072,23813243-23813335,
23813578-23813581,23813780-23814703,23814926-23815909,
23816073-23816118,23816376-23816951,23817253-23817798,
23817820-23818416
Length = 2252
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -3
Query: 118 TFSAPRWVVAASILVTSSSLRASTSNP 38
TF A RWV+AA V + L AS S+P
Sbjct: 2100 TFHAHRWVLAARSPVLKAKLSASPSSP 2126
>06_03_0543 + 21967787-21970261
Length = 824
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +1
Query: 544 LMWWLLAREVLRLRGVLPRDQRWDVVVDLF 633
L W++L RE +LRGV P + ++++ + F
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHF 501
>04_04_1176 + 31494318-31495685
Length = 455
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +1
Query: 478 RLPTKICGHCFPCNTKSSHSIGLMWWLLARE 570
RLP C CF C K S ++G + RE
Sbjct: 188 RLPRMPCDECFSCADKESLAVGTQLLVFGRE 218
>01_06_0364 -
28749825-28750053,28750442-28750621,28751018-28751147,
28751442-28751756,28752033-28752075,28752108-28752500
Length = 429
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +1
Query: 259 LITALRSACCTEVCRAHRCYAYCGAFHTRCF 351
L+ LR T+V RAHRC A T CF
Sbjct: 97 LLPLLRRRGATDVVRAHRCIPLHPALITSCF 127
>01_06_0902 +
32853708-32853739,32854787-32855596,32856094-32856157,
32856375-32856446
Length = 325
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +2
Query: 125 PDGDLCLQTTC*WYPCDQLASYLGKTCSGCSCCRSH 232
P +C+ T C C K CS CSC + H
Sbjct: 265 PQNSVCMVTLCTSEICSGRRYAAKKLCSACSCHKRH 300
>01_01_0703 -
5425713-5425862,5426302-5426451,5426853-5426964,
5427120-5427481,5427578-5427712,5427812-5427889,
5427989-5428174,5428266-5428452,5428552-5428658,
5428732-5428806,5428885-5429040,5429165-5429437,
5429548-5429643,5429724-5429814,5429883-5430385
Length = 886
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -1
Query: 606 LVTGKHTTKPQHFTCQQPPHQTNRVGRLGVAWEAMSTNLS 487
+ +G H + QH Q PP + G + +A E ++ LS
Sbjct: 143 VTSGHHHQQQQHNVVQPPPRDASPAGLMSIAEETLTEFLS 182
>12_01_1093 -
11374087-11374140,11374337-11374438,11375793-11375873,
11376005-11376343
Length = 191
Score = 27.9 bits (59), Expect = 7.3
Identities = 23/72 (31%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
Frame = +2
Query: 194 GKTCSGCSCCRSHREP-R*CVLISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQA 370
G+ SGC CR R ++ R RAV AA + P R+TPG +
Sbjct: 54 GRVASGCLACRRWEHLLRDGDPVAYRRLITRAVCAIAADDLSAPPPPRYTPGNSGHSQAR 113
Query: 371 AFREPRLLIVLD 406
RE IV D
Sbjct: 114 LVREMMKSIVAD 125
>06_03_0424 - 20648938-20649564,20650588-20650902
Length = 313
Score = 27.9 bits (59), Expect = 7.3
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 225 VAIENPADVFSSHHGPSVSVLY*SLP 302
V++ P+ + SSHH P +S L+ LP
Sbjct: 71 VSLVTPSSISSSHHTPPLSALHIMLP 96
>01_06_0575 -
30357556-30357582,30357698-30357944,30358039-30358161,
30358275-30358301,30358475-30358633,30359764-30359948,
30360225-30360293,30360432-30362354,30363018-30363339,
30363506-30363543
Length = 1039
Score = 27.9 bits (59), Expect = 7.3
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +2
Query: 161 WYPCDQLASYLGKTCSGCSCCRSHREP 241
++PC +GKT S C + HR P
Sbjct: 615 YHPCQPTVRLMGKTVSVCERSKEHRVP 641
>05_02_0051 -
6110320-6110375,6110554-6110696,6111011-6111124,
6111586-6111685,6111768-6111850,6112003-6112087,
6112773-6112828,6113569-6114056
Length = 374
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -3
Query: 115 FSAPRWVVAASILVTSSSLRASTSNPPDIVALI*VTTK 2
FS +VAA+ L + S RA+T PP + A+ T K
Sbjct: 58 FSVACLLVAAASLAFAFSARAATLQPPPLAAVAEATAK 95
>03_02_0792 +
11236785-11237337,11237711-11238261,11238446-11238628,
11238768-11238966,11239055-11239761
Length = 730
Score = 27.5 bits (58), Expect = 9.7
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = +2
Query: 305 HTGATPIAGRFTPGAFTNQIQAAFREPRLLI--VLDPAQDHQPITEASYVNIPVIALCNT 478
HT +T R TP AF + AA E R+ + + ++ EA Y +I V + +
Sbjct: 270 HTLSTGETVRVTPAAFDSVTPAAIDETRVAVAAIRQKSEFSDVRVEAQYRHIEVFDMRSP 329
Query: 479 DSPLR 493
+ P++
Sbjct: 330 EQPMQ 334
>01_07_0027 -
40578075-40578437,40578647-40578767,40578852-40578952,
40579176-40579451,40579485-40579805,40581609-40581623,
40581969-40582295,40583287-40583538
Length = 591
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = -1
Query: 630 QINHNIPALVTGKHTTKPQHFTCQQPPHQTNRVG 529
Q NIP LVT TTK + F PPH +G
Sbjct: 467 QAKPNIPRLVTSTSTTKLERF---PPPHLDASIG 497
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,858,329
Number of Sequences: 37544
Number of extensions: 500890
Number of successful extensions: 1357
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1357
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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