Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30720
(645 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identi... 128 2e-30
At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identi... 123 9e-29
At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identi... 123 9e-29
At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RP... 34 0.093
At2g22340.1 68415.m02651 hypothetical protein 33 0.21
At2g07020.1 68415.m00803 protein kinase family protein contains ... 30 1.5
At4g34890.1 68417.m04948 xanthine dehydrogenase, putative simila... 29 3.5
At1g51250.1 68414.m05764 expressed protein similar to hypothetic... 28 4.6
At4g14930.1 68417.m02293 acid phosphatase survival protein SurE,... 28 6.1
At4g14120.1 68417.m02179 expressed protein 27 8.1
At2g41830.1 68415.m05169 cyclin-related contains Pfam profile PF... 27 8.1
At1g51240.1 68414.m05763 hypothetical protein similar to hypothe... 27 8.1
>At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identical
to laminin receptor-like protein GB:U01955 [Arabidopsis
thaliana]; identical to cDNA laminin receptor homologue
GI:16379
Length = 298
Score = 128 bits (310), Expect = 2e-30
Identities = 58/89 (65%), Positives = 71/89 (79%)
Frame = +2
Query: 239 PR*CVLISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 418
P+ ++ S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ DP D
Sbjct: 75 PQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTD 134
Query: 419 HQPITEASYVNIPVIALCNTDSPLRFVDI 505
HQPI E + NIP+IA C+TDSP+RFVDI
Sbjct: 135 HQPIKEGALGNIPIIAFCDTDSPMRFVDI 163
Score = 88.6 bits (210), Expect = 3e-18
Identities = 39/67 (58%), Positives = 49/67 (73%)
Frame = +3
Query: 51 LALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVA 230
L+ E DV M AA HLG +N N+QME YV+KRR DG ++ NL +TWEKL +AAR +VA
Sbjct: 12 LSQKEADVRMMCAAEVHLGTKNCNYQMERYVFKRRNDGIYIFNLGKTWEKLQMAARVIVA 71
Query: 231 IENPADV 251
IENP D+
Sbjct: 72 IENPQDI 78
Score = 68.9 bits (161), Expect = 3e-12
Identities = 28/45 (62%), Positives = 35/45 (77%)
Frame = +1
Query: 511 PCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRE 645
P N K HSIG ++WLLAR VL++RG + Q+WDV+VDLFFYRE
Sbjct: 166 PANNKGKHSIGCLFWLLARMVLQMRGTIAAGQKWDVMVDLFFYRE 210
>At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identical
to p40 protein homolog GB:AAB67866 [Arabidopsis
thaliana]; similar to 40S ribosomal protein SA (P40)
GB:O65751 [Cicer arietinum]
Length = 280
Score = 123 bits (297), Expect = 9e-29
Identities = 56/89 (62%), Positives = 68/89 (76%)
Frame = +2
Query: 239 PR*CVLISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 418
P+ ++ S+RP+GQRAVLKFA +TG IAGR TPG FTNQ+Q +F EPRLLI+ DP D
Sbjct: 76 PKDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTD 135
Query: 419 HQPITEASYVNIPVIALCNTDSPLRFVDI 505
HQPI E + NIP IA C+TDSP+ FVDI
Sbjct: 136 HQPIKEGALGNIPTIAFCDTDSPMGFVDI 164
Score = 88.2 bits (209), Expect = 4e-18
Identities = 37/63 (58%), Positives = 49/63 (77%)
Frame = +3
Query: 63 EEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENP 242
E D+ ML+A HLG +N N+QME YV+KRR DG ++INL +TW+KL +AAR +VAIENP
Sbjct: 17 EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENP 76
Query: 243 ADV 251
D+
Sbjct: 77 KDI 79
Score = 67.7 bits (158), Expect = 6e-12
Identities = 28/45 (62%), Positives = 35/45 (77%)
Frame = +1
Query: 511 PCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRE 645
P N K HSIG ++WLLAR VL++RG + Q+WDV+VDLFFYRE
Sbjct: 167 PANNKGKHSIGCLFWLLARMVLQMRGTILAAQKWDVMVDLFFYRE 211
>At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identical
to p40 protein homolog GB:AAB67866 [Arabidopsis
thaliana]; similar to 40S ribosomal protein SA (P40)
GB:O65751 [Cicer arietinum]
Length = 332
Score = 123 bits (297), Expect = 9e-29
Identities = 56/89 (62%), Positives = 68/89 (76%)
Frame = +2
Query: 239 PR*CVLISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 418
P+ ++ S+RP+GQRAVLKFA +TG IAGR TPG FTNQ+Q +F EPRLLI+ DP D
Sbjct: 76 PKDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTD 135
Query: 419 HQPITEASYVNIPVIALCNTDSPLRFVDI 505
HQPI E + NIP IA C+TDSP+ FVDI
Sbjct: 136 HQPIKEGALGNIPTIAFCDTDSPMGFVDI 164
Score = 88.2 bits (209), Expect = 4e-18
Identities = 37/63 (58%), Positives = 49/63 (77%)
Frame = +3
Query: 63 EEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENP 242
E D+ ML+A HLG +N N+QME YV+KRR DG ++INL +TW+KL +AAR +VAIENP
Sbjct: 17 EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENP 76
Query: 243 ADV 251
D+
Sbjct: 77 KDI 79
Score = 52.4 bits (120), Expect = 2e-07
Identities = 21/39 (53%), Positives = 29/39 (74%)
Frame = +1
Query: 511 PCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVD 627
P N K HSIG ++WLLAR VL++RG + Q+WDV+V+
Sbjct: 167 PANNKGKHSIGCLFWLLARMVLQMRGTILAAQKWDVMVN 205
>At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RPS2)
identical to SP|Q9GCB9 Mitochondrial ribosomal protein
S2 {Arabidopsis thaliana}; contains Pfam profile
PF00318: ribosomal protein S2
Length = 219
Score = 33.9 bits (74), Expect = 0.093
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +2
Query: 383 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIASHATPS 526
P ++V D + I EAS + IPV+A+ + + PL F + ++ P+
Sbjct: 131 PDCVVVFDSERKSSVILEASKLQIPVVAIVDPNVPLEFFEKITYPVPA 178
>At2g22340.1 68415.m02651 hypothetical protein
Length = 358
Score = 32.7 bits (71), Expect = 0.21
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +2
Query: 101 SWGRKC*LPDGDLCLQTTC*WYPCDQLASYLGKTCSGCSC 220
SW LP+GD +Q C WY + S +G+ + C
Sbjct: 188 SWTEASLLPEGDCFIQLNCLWYKPKEDTSVMGRKMASSDC 227
>At2g07020.1 68415.m00803 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 700
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +2
Query: 338 TPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEA 439
TP TNQ++ A E +LDP PI EA
Sbjct: 620 TPMGLTNQVEKAIEEGNFAKILDPLVTDWPIEEA 653
>At4g34890.1 68417.m04948 xanthine dehydrogenase, putative similar
to xanthine dehydrogenase from Gallus gallus, PIR:XOCHDH
[SP|P47990]; contains Pfam profile PF02738 Aldehyde
oxidase and xanthine dehydrogenase, molybdopterin
binding domain
Length = 1361
Score = 28.7 bits (61), Expect = 3.5
Identities = 16/64 (25%), Positives = 30/64 (46%)
Frame = -1
Query: 627 INHNIPALVTGKHTTKPQHFTCQQPPHQTNRVGRLGVAWEAMSTNLSGESVLHKAITGML 448
++HN+ + T P H + QP + +R+G+ T++ G S +H + +
Sbjct: 553 VSHNVNNANSAIETFPPSHMSAVQPVPRLSRIGKQDYETVKQGTSV-GSSEVHLSARMQV 611
Query: 447 TYEA 436
T EA
Sbjct: 612 TGEA 615
>At1g51250.1 68414.m05764 expressed protein similar to hypothetical
protein GB:AAD30637
Length = 139
Score = 28.3 bits (60), Expect = 4.6
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 477 QTPH*DLWTLLPMQHQVFPLYWFDVVV 557
Q PH + W L + H P YWFD+ V
Sbjct: 73 QLPHGEKWYCL-ISHGTRPKYWFDIEV 98
>At4g14930.1 68417.m02293 acid phosphatase survival protein SurE,
putative similar to Swiss-Prot:P36664 acid phosphatase
surE (EC 3.1.3.2) (Stationary-phase survival protein
surE) [Escherichia coli O157:H7]; contains Pfam domain
PF01975: Survival protein SurE
Length = 315
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/40 (35%), Positives = 17/40 (42%)
Frame = +1
Query: 451 HSCDCFVQHRLPTKICGHCFPCNTKSSHSIGLMWWLLARE 570
H CF+ LPT I H T+ S+G M W E
Sbjct: 180 HPMQCFLNIDLPTDIANHKGYKLTRQGKSMGKMGWRQVEE 219
>At4g14120.1 68417.m02179 expressed protein
Length = 368
Score = 27.5 bits (58), Expect = 8.1
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = -2
Query: 632 NKSTTTSQRWS-RGSTPRSLNTSRANNHHIKPIEWEDLVLHGKQCPQILVGSLC 474
+K T S R S R ++P S + +HH PI+ + + + C ++ V +LC
Sbjct: 30 SKLRTQSNRSSVRFASPLSHIVTDLRHHHASPIKGKIVTQMPRTCSRVTVKNLC 83
>At2g41830.1 68415.m05169 cyclin-related contains Pfam profile
PF02984: Cyclin, C-terminal domain
Length = 1025
Score = 27.5 bits (58), Expect = 8.1
Identities = 18/55 (32%), Positives = 32/55 (58%)
Frame = -2
Query: 290 VQHADRRAVMR*EHISGVLDGYDSTSSQNKFFPGTTQVDHMGTISTSFVDIGLHL 126
++H D ++V++ H S L+ + TSS ++ T +V+H TI ++ DI HL
Sbjct: 349 IKHLDHKSVLK--HPSMQLNILEVTSSLSE----TAKVEHSATIVSAISDIMRHL 397
>At1g51240.1 68414.m05763 hypothetical protein similar to
hypothetical protein GB:AAD30637
Length = 127
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 477 QTPH*DLWTLLPMQHQVFPLYWFDVVV 557
Q PH + W L + H P YW+D+ V
Sbjct: 61 QLPHGERWYCL-LSHGTRPKYWYDIEV 86
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,198,725
Number of Sequences: 28952
Number of extensions: 378340
Number of successful extensions: 969
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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