Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30718
         (732 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identi...   127   9e-30
At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identi...   122   3e-28
At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identi...   122   3e-28
At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RP...    34   0.085
At2g22340.1 68415.m02651 hypothetical protein                          33   0.26 
At2g07020.1 68415.m00803 protein kinase family protein contains ...    30   1.8  
At1g72710.1 68414.m08408 casein kinase, putative similar to case...    28   7.3  
At4g34890.1 68417.m04948 xanthine dehydrogenase, putative simila...    27   9.7  
At4g07990.1 68417.m01280 DNAJ heat shock N-terminal domain-conta...    27   9.7  

>At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identical
           to laminin receptor-like protein GB:U01955 [Arabidopsis
           thaliana]; identical to cDNA laminin receptor homologue
           GI:16379
          Length = 298

 Score =  127 bits (306), Expect = 9e-30
 Identities = 57/89 (64%), Positives = 70/89 (78%)
 Frame = +2

Query: 248 PRYVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 427
           P+ + V S+RP+GQRAVLKFA +TGA  IAGR TPG FTNQ+Q +F EPRLLI+ DP  D
Sbjct: 75  PQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTD 134

Query: 428 HQPITEASYVNIPVIALCNTDSPLRFVTL 514
           HQPI E +  NIP+IA C+TDSP+RFV +
Sbjct: 135 HQPIKEGALGNIPIIAFCDTDSPMRFVDI 163



 Score = 87.4 bits (207), Expect = 9e-18
 Identities = 38/69 (55%), Positives = 51/69 (73%), Gaps = 1/69 (1%)
 Frame = +1

Query: 493 PTKICDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESE- 669
           P +  DI IP N K  HSIG ++WLLAR VL++RG +   Q+WDV+VDLFFYR+PEE++ 
Sbjct: 157 PMRFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIAAGQKWDVMVDLFFYREPEETKP 216

Query: 670 KDEQQAKEQ 696
           +DE +A  Q
Sbjct: 217 EDEDEAGPQ 225



 Score = 85.4 bits (202), Expect = 3e-17
 Identities = 38/64 (59%), Positives = 47/64 (73%)
 Frame = +3

Query: 60  LALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVA 239
           L+  E DV  M AA  HLG +N N+QME YV+KRR DG ++ NL +TWEKL +AAR +VA
Sbjct: 12  LSQKEADVRMMCAAEVHLGTKNCNYQMERYVFKRRNDGIYIFNLGKTWEKLQMAARVIVA 71

Query: 240 IENP 251
           IENP
Sbjct: 72  IENP 75


>At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 280

 Score =  122 bits (293), Expect = 3e-28
 Identities = 55/89 (61%), Positives = 67/89 (75%)
 Frame = +2

Query: 248 PRYVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 427
           P+ + V S+RP+GQRAVLKFA +TG   IAGR TPG FTNQ+Q +F EPRLLI+ DP  D
Sbjct: 76  PKDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTD 135

Query: 428 HQPITEASYVNIPVIALCNTDSPLRFVTL 514
           HQPI E +  NIP IA C+TDSP+ FV +
Sbjct: 136 HQPIKEGALGNIPTIAFCDTDSPMGFVDI 164



 Score = 85.0 bits (201), Expect = 5e-17
 Identities = 36/60 (60%), Positives = 47/60 (78%)
 Frame = +3

Query: 72  EEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENP 251
           E D+  ML+A  HLG +N N+QME YV+KRR DG ++INL +TW+KL +AAR +VAIENP
Sbjct: 17  EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENP 76



 Score = 83.4 bits (197), Expect = 1e-16
 Identities = 35/67 (52%), Positives = 48/67 (71%)
 Frame = +1

Query: 493 PTKICDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEK 672
           P    DI IP N K  HSIG ++WLLAR VL++RG +   Q+WDV+VDLFFYR+PEE+++
Sbjct: 158 PMGFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTILAAQKWDVMVDLFFYREPEEAKQ 217

Query: 673 DEQQAKE 693
           +  +  E
Sbjct: 218 EGDEEAE 224


>At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 332

 Score =  122 bits (293), Expect = 3e-28
 Identities = 55/89 (61%), Positives = 67/89 (75%)
 Frame = +2

Query: 248 PRYVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 427
           P+ + V S+RP+GQRAVLKFA +TG   IAGR TPG FTNQ+Q +F EPRLLI+ DP  D
Sbjct: 76  PKDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTD 135

Query: 428 HQPITEASYVNIPVIALCNTDSPLRFVTL 514
           HQPI E +  NIP IA C+TDSP+ FV +
Sbjct: 136 HQPIKEGALGNIPTIAFCDTDSPMGFVDI 164



 Score = 85.0 bits (201), Expect = 5e-17
 Identities = 36/60 (60%), Positives = 47/60 (78%)
 Frame = +3

Query: 72  EEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENP 251
           E D+  ML+A  HLG +N N+QME YV+KRR DG ++INL +TW+KL +AAR +VAIENP
Sbjct: 17  EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENP 76



 Score = 59.3 bits (137), Expect = 3e-09
 Identities = 25/48 (52%), Positives = 33/48 (68%)
 Frame = +1

Query: 493 PTKICDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVD 636
           P    DI IP N K  HSIG ++WLLAR VL++RG +   Q+WDV+V+
Sbjct: 158 PMGFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTILAAQKWDVMVN 205


>At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RPS2)
           identical to SP|Q9GCB9 Mitochondrial ribosomal protein
           S2 {Arabidopsis thaliana}; contains Pfam profile
           PF00318: ribosomal protein S2
          Length = 219

 Score = 34.3 bits (75), Expect = 0.085
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = +2

Query: 392 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVTLLSHATPS 535
           P  ++V D  +    I EAS + IPV+A+ + + PL F   +++  P+
Sbjct: 131 PDCVVVFDSERKSSVILEASKLQIPVVAIVDPNVPLEFFEKITYPVPA 178


>At2g22340.1 68415.m02651 hypothetical protein
          Length = 358

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +2

Query: 110 SWGRKC*LPDGDLCLQTTC*WYPCDQLASYLGKTCSGCSC 229
           SW     LP+GD  +Q  C WY   +  S +G+  +   C
Sbjct: 188 SWTEASLLPEGDCFIQLNCLWYKPKEDTSVMGRKMASSDC 227


>At2g07020.1 68415.m00803 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 700

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +2

Query: 347 TPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEA 448
           TP   TNQ++ A  E     +LDP     PI EA
Sbjct: 620 TPMGLTNQVEKAIEEGNFAKILDPLVTDWPIEEA 653


>At1g72710.1 68414.m08408 casein kinase, putative similar to casein
           kinase I, delta isoform [Arabidopsis thaliana]
           SWISS-PROT:P42158
          Length = 465

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -3

Query: 673 PFHFLQGHGRRTNQPQHPSAGHGEAHHEASTLHVPTTTTSN 551
           P +FL G GRR NQ      G  + + +++  H+P     N
Sbjct: 131 PDNFLMGLGRRANQVYVIDFGLAKKYRDSNHQHIPYRENKN 171


>At4g34890.1 68417.m04948 xanthine dehydrogenase, putative similar
           to xanthine dehydrogenase from Gallus gallus, PIR:XOCHDH
           [SP|P47990]; contains Pfam profile PF02738 Aldehyde
           oxidase and xanthine dehydrogenase, molybdopterin
           binding domain
          Length = 1361

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 16/64 (25%), Positives = 30/64 (46%)
 Frame = -1

Query: 636 INHNIPALVTGKHTTKPQHFTCQQPPHQTNRVGRLGVAWDSNVTNLSGESVLHKAITGML 457
           ++HN+    +   T  P H +  QP  + +R+G+         T++ G S +H +    +
Sbjct: 553 VSHNVNNANSAIETFPPSHMSAVQPVPRLSRIGKQDYETVKQGTSV-GSSEVHLSARMQV 611

Query: 456 TYEA 445
           T EA
Sbjct: 612 TGEA 615


>At4g07990.1 68417.m01280 DNAJ heat shock N-terminal
           domain-containing protein similar to SP|Q9QYI5 DnaJ
           homolog subfamily B member 10 Mus musculus ; contains
           Pfam profile PF00226 DnaJ domain
          Length = 347

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
 Frame = +2

Query: 236 SHREPRYVFVISSRPFGQRAVLKFAAHTGATPIA-GRFTPGAFTN-QIQAAFREPRLLIV 409
           SHR  R        P  QR V   + H     ++  R TP  +T  +I+ AFRE  L   
Sbjct: 261 SHRNQR---TNHQEPSDQRRVYPLSHHYSVLGLSRSRATP--YTEAEIKKAFREKALEFH 315

Query: 410 LDPAQDHQPITEASYVNI 463
            D  QD++ + EA +  +
Sbjct: 316 PDQNQDNKIVAEAKFKEV 333


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,070,156
Number of Sequences: 28952
Number of extensions: 394936
Number of successful extensions: 1012
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1012
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)