Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30715
(671 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 171 6e-44
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 96 5e-21
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 96 5e-21
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 90 3e-19
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 62 7e-11
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 59 5e-10
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 50 2e-07
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 39 8e-04
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 34 0.016
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 32 0.086
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 31 0.15
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.35
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 29 0.46
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 28 1.1
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 27 1.9
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 1.9
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 3.3
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 27 3.3
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 26 5.7
SPAC664.14 |amt2||ammonium transporter Amt2|Schizosaccharomyces ... 25 7.5
SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces pom... 25 7.5
SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces pomb... 25 7.5
SPAC29A4.20 |||RNA polymerase II elongator complex, histone acet... 25 9.9
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 25 9.9
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch... 25 9.9
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 171 bits (417), Expect = 6e-44
Identities = 77/84 (91%), Positives = 80/84 (95%)
Frame = +1
Query: 256 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE 435
AQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPK+NRE
Sbjct: 58 AQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNRE 117
Query: 436 KMTQIMFQTFNTPAMYVAIQAVLS 507
KMTQI+F+TFN PA YVAIQAVLS
Sbjct: 118 KMTQIIFETFNAPAFYVAIQAVLS 141
Score = 116 bits (280), Expect = 2e-27
Identities = 51/60 (85%), Positives = 57/60 (95%)
Frame = +2
Query: 89 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDGHRAK 268
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGD ++K
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Score = 111 bits (266), Expect = 1e-25
Identities = 51/54 (94%), Positives = 53/54 (98%)
Frame = +3
Query: 510 YASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTER 671
YASGRTTGIVLDSGDGV+HTVPIYEGYALPHAI+RLDLAGRDLTDYLMKIL ER
Sbjct: 143 YASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILMER 196
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 95.9 bits (228), Expect = 5e-21
Identities = 39/76 (51%), Positives = 52/76 (68%)
Frame = +1
Query: 280 TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFQ 459
+L YPI HG + NWD ME+ W + + LR PE+H LLTE PLNP NRE +IMF+
Sbjct: 89 SLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFE 148
Query: 460 TFNTPAMYVAIQAVLS 507
+FN +Y+A+QAVL+
Sbjct: 149 SFNCAGLYIAVQAVLA 164
Score = 56.4 bits (130), Expect = 4e-09
Identities = 23/48 (47%), Positives = 35/48 (72%)
Frame = +3
Query: 528 TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTER 671
TG V+DSGDGV+H +P+ EGY + +I + LAGRD+T ++ +L +R
Sbjct: 180 TGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDR 227
Score = 44.4 bits (100), Expect = 2e-05
Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 5/56 (8%)
Frame = +2
Query: 107 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKDSYV---GDGH 259
+++DNG+G K G+AG+DAP VFP+++ R G G + K SY+ G GH
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIA-TRSAGASSGPAVSSKPSYMASKGSGH 62
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 95.9 bits (228), Expect = 5e-21
Identities = 39/84 (46%), Positives = 63/84 (75%)
Frame = +1
Query: 256 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE 435
A++ R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P+NP ANRE
Sbjct: 58 AEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANRE 117
Query: 436 KMTQIMFQTFNTPAMYVAIQAVLS 507
KM + MF+ + +YVAIQAVLS
Sbjct: 118 KMCETMFERYGFGGVYVAIQAVLS 141
Score = 69.3 bits (162), Expect = 5e-13
Identities = 29/54 (53%), Positives = 40/54 (74%)
Frame = +3
Query: 510 YASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTER 671
YA G ++G+V+DSGDGV+H VP+YE L H + RLD+AGRD T YL+ +L +
Sbjct: 143 YAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLVGRLDVAGRDATRYLISLLLRK 196
Score = 49.6 bits (113), Expect = 4e-07
Identities = 27/55 (49%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Frame = +2
Query: 95 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGD 253
E A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGD
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGD 56
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 89.8 bits (213), Expect = 3e-19
Identities = 39/85 (45%), Positives = 59/85 (69%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANR 432
AQ+ RG+L ++ PIE GI+ NW DME+IW + + ++ L PEEHP+LLTE PL N+
Sbjct: 62 AQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNK 121
Query: 433 EKMTQIMFQTFNTPAMYVAIQAVLS 507
EK+ + ++T N PA+ ++Q VL+
Sbjct: 122 EKIAEYFYETLNVPALSFSLQPVLA 146
Score = 71.7 bits (168), Expect = 9e-14
Identities = 29/47 (61%), Positives = 41/47 (87%)
Frame = +3
Query: 510 YASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYL 650
YAS RTTGIVL+ GDG++H+VPIY+G+++P AI + ++ GRD+TDYL
Sbjct: 148 YASARTTGIVLECGDGLTHSVPIYDGFSIPSAIQQEEIGGRDVTDYL 194
Score = 63.7 bits (148), Expect = 2e-11
Identities = 27/48 (56%), Positives = 35/48 (72%)
Frame = +2
Query: 107 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVG 250
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVG 59
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 62.1 bits (144), Expect = 7e-11
Identities = 28/73 (38%), Positives = 41/73 (56%)
Frame = +1
Query: 277 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 456
+ +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K + MF
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMF 122
Query: 457 QTFNTPAMYVAIQ 495
++ PA Y+A Q
Sbjct: 123 ESLRCPATYLAKQ 135
Score = 40.3 bits (90), Expect = 2e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +2
Query: 92 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 193
+EV+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
Score = 31.1 bits (67), Expect = 0.15
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +3
Query: 507 AYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTER 671
A+ASG+ T ++D G S IY+G+ L +G + D L + L ++
Sbjct: 140 AFASGKGTACLVDIGAERSSVSAIYDGFVLQKGYQVQHFSGNAINDILAQTLRDK 194
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 59.3 bits (137), Expect = 5e-10
Identities = 25/72 (34%), Positives = 43/72 (59%)
Frame = +1
Query: 292 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFQTFNT 471
P E +++NWD ME++ +TF +L + EHP+ +TE NP R MT+++F+ +N
Sbjct: 86 PFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFELYNA 144
Query: 472 PAMYVAIQAVLS 507
P++ I + S
Sbjct: 145 PSVAYGIDGLFS 156
Score = 35.9 bits (79), Expect = 0.005
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +2
Query: 107 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 202
LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
Score = 34.7 bits (76), Expect = 0.012
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +3
Query: 525 TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKI 659
++GIVL+ G+ SH +P+ G + R+ G + YL+K+
Sbjct: 165 SSGIVLNLGNAASHVIPVLNGERILSEAKRISWGGSQSSSYLLKL 209
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 50.4 bits (115), Expect = 2e-07
Identities = 20/67 (29%), Positives = 39/67 (58%)
Frame = +1
Query: 301 HGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFQTFNTPAM 480
+GI+ +W+ W +L+V P E+ +++TE NP++ R+++ + F+ + PA
Sbjct: 74 NGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAF 133
Query: 481 YVAIQAV 501
Y+ QAV
Sbjct: 134 YLTKQAV 140
Score = 36.7 bits (81), Expect = 0.003
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +2
Query: 92 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 193
EE+ +LV+D GS + G+AG+++P + PS G
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 38.7 bits (86), Expect = 8e-04
Identities = 15/46 (32%), Positives = 30/46 (65%)
Frame = +3
Query: 534 IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTER 671
+V+DSG +H +P+ + A+ R+D+ G+ LT+YL ++++ R
Sbjct: 159 LVIDSGYSFTHIIPVIDFSVQEQAVKRVDVGGKLLTNYLKEVISYR 204
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 34.3 bits (75), Expect = 0.016
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Frame = +1
Query: 292 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFQ 459
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ F+
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 460 TFNTPAMYVAIQAVL 504
P +A + ++
Sbjct: 172 ECQVPGFTIAYEPLM 186
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 31.9 bits (69), Expect = 0.086
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +1
Query: 352 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFQTFNTPAM---YVAIQ 495
+Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 31.1 bits (67), Expect = 0.15
Identities = 14/56 (25%), Positives = 30/56 (53%)
Frame = +3
Query: 495 SRALAYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKIL 662
S ++ +G + V+D G + + EG +P++ ++++ G D+T MK+L
Sbjct: 281 SLCTSFGAGMSAACVVDMGAQKTSISCVEEGVVVPNSRIKINYGGDDITLLFMKLL 336
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.9 bits (64), Expect = 0.35
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -3
Query: 249 PT*ESFCPI-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 88
PT S P+ PT+ P P N S P PL+TTN TS+S
Sbjct: 401 PTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 29.5 bits (63), Expect = 0.46
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = +1
Query: 475 AMYVAIQAVLSRTRPVVPPVSCWTPATVSPTPCPSTKDTHSP 600
A + + RTR + PPV+C TP P C K H P
Sbjct: 615 ASFEELPCTCGRTR-LYPPVACGTPIPDCPYLCVLPKSCHHP 655
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 28.3 bits (60), Expect = 1.1
Identities = 18/66 (27%), Positives = 29/66 (43%)
Frame = -3
Query: 324 IPVSDDSVFDGVFEGQDTSFALCPSPT*ESFCPIPTITP*WRGLPTIEGNTARGASSPAK 145
+P + +V +TSFAL + S PT + P +E + +S+PA
Sbjct: 63 LPTQEAAVETNASASHETSFALPTTSPAASLSISPTKSAAVSSEPNVEADVKSLSSTPAA 122
Query: 144 PALHIP 127
P L+ P
Sbjct: 123 PQLNSP 128
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 27.5 bits (58), Expect = 1.9
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -1
Query: 251 LLHKSPSVPYRPSRPDGGAFPRSRGTR 171
L+ K+PS PY SRP A S TR
Sbjct: 309 LISKAPSYPYSSSRPSASASLASSPTR 335
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.5 bits (58), Expect = 1.9
Identities = 14/46 (30%), Positives = 19/46 (41%)
Frame = +1
Query: 472 PAMYVAIQAVLSRTRPVVPPVSCWTPATVSPTPCPSTKDTHSPTPS 609
P A + + P VP S P+ P P PS++ P PS
Sbjct: 1035 PVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPS 1080
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 3.3
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -3
Query: 252 SPT*ESFC--PIPTITP*WRGLPTIEGNTARGASSPAKPAL 136
S T +SF P+PT P LPT NT + P+ PAL
Sbjct: 64 SNTPKSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 26.6 bits (56), Expect = 3.3
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = +1
Query: 457 QTFNTPAMYVAIQAVLSRTRPVVPPVSCWTPATVSPTPCPSTKDT 591
+T ++ + S T P S TPA V P P PST T
Sbjct: 815 KTSQASSILPTVPRTTSYTSPYATTSSHITPADVHPLPPPSTSTT 859
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 25.8 bits (54), Expect = 5.7
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -1
Query: 134 TYRSHCLLPTRQLLRRTS*ISEI 66
TYR H +PT LL T +SEI
Sbjct: 168 TYRDHDAIPTATLLNPTLDVSEI 190
>SPAC664.14 |amt2||ammonium transporter Amt2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 512
Score = 25.4 bits (53), Expect = 7.5
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = -1
Query: 602 VGECVSFVDGHGVGDTVAGVQHDTGGTTGRVREST--AWMATYMAGVLNVWNMIWVIF 435
+G CVSF + G ++A Q T G G +R +A Y G N+ +++ F
Sbjct: 86 LGLCVSFFQWYFWGYSLAFSQTGTSGYIGNLRHFAFIRTLADYSPGSNNIPELVFANF 143
>SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 25.4 bits (53), Expect = 7.5
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -2
Query: 550 PESSTIPVVRPDAYARARLGWRRTWR 473
PE + ++R D+Y R GW R R
Sbjct: 611 PEGVRVNIMRDDSYYRQNRGWYRNNR 636
>SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 910
Score = 25.4 bits (53), Expect = 7.5
Identities = 8/25 (32%), Positives = 15/25 (60%)
Frame = +1
Query: 472 PAMYVAIQAVLSRTRPVVPPVSCWT 546
P +Y ++L +P+V ++CWT
Sbjct: 454 PELYPYFLSLLDSKKPLVRTITCWT 478
>SPAC29A4.20 |||RNA polymerase II elongator complex, histone
acetyltransferase subunit |Schizosaccharomyces pombe|chr
1|||Manual
Length = 544
Score = 25.0 bits (52), Expect = 9.9
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 4/29 (13%)
Frame = +2
Query: 578 LRRIRTPPRHPASGLS----RSRPHRLPH 652
+R++R P ASG++ +PHR PH
Sbjct: 70 MRKLRAKPVRTASGIAVVAVMCKPHRCPH 98
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 25.0 bits (52), Expect = 9.9
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = +1
Query: 394 LLTEAPLNPKANREKMTQIMFQTFN 468
+L APL+ + +KM +++F+T+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 25.0 bits (52), Expect = 9.9
Identities = 19/59 (32%), Positives = 25/59 (42%)
Frame = +1
Query: 430 REKMTQIMFQTFNTPAMYVAIQAVLSRTRPVVPPVSCWTPATVSPTPCPSTKDTHSPTP 606
RE++ Q+ Q P+ Y+ LS P P S P+ PST HSP P
Sbjct: 134 RERLNQVELQLSERPSSYLGYHNNLS---PYRSPNSY-------PSLLPSTHSPHSPAP 182
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,043,850
Number of Sequences: 5004
Number of extensions: 69591
Number of successful extensions: 251
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 246
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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