Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30714
(687 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po... 68 1e-12
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po... 45 1e-05
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ... 37 0.003
SPBC12D12.07c |trx2||mitochondrial thioredoxin Trx2|Schizosaccha... 33 0.029
SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyc... 33 0.051
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ... 31 0.12
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid... 29 0.48
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c... 27 1.9
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1... 27 3.4
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos... 27 3.4
SPAC6F6.11c |||pyridoxine-pyridoxal-pyridoxamine kinase |Schizos... 26 5.9
SPBC16H5.11c |skb1|rmt5|type II protein arginine N-methyltransfe... 25 7.8
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual 25 7.8
>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 492
Score = 68.1 bits (159), Expect = 1e-12
Identities = 28/59 (47%), Positives = 43/59 (72%)
Frame = +3
Query: 312 KVDCTEGGKSTCEQFSVSGYPTLKIFRKGELSSEYNGPRESNGIVKYMRAQVGPSSKEL 488
+VDCTE G C ++S+ GYPTL +F+ G+ S+Y+GPR+ + +VKYMR Q+ P+ K +
Sbjct: 77 EVDCTEEG-DLCSEYSIRGYPTLNVFKNGKQISQYSGPRKHDALVKYMRKQLLPTVKPI 134
Score = 42.7 bits (96), Expect = 5e-05
Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +2
Query: 137 AEEDVLDLTDSDFS-AVLSQHDTALVMFYAPWCGHCKRL 250
++ED++ L +F V+ + LV FYAPWCGHCK L
Sbjct: 353 SQEDLVVLVADNFDDIVMDETKDVLVEFYAPWCGHCKNL 391
Score = 39.1 bits (87), Expect = 6e-04
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +2
Query: 122 YLCKAAEEDVLDLTDSDFSAVLSQHDTALVMFYAPWCGHCKRL 250
+ C +AE V + + +++ +V FYAPWCGHCK L
Sbjct: 17 FFCASAE--VPKVNKEGLNELITADKVLMVKFYAPWCGHCKAL 57
>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 363
Score = 44.8 bits (101), Expect = 1e-05
Identities = 20/64 (31%), Positives = 34/64 (53%)
Frame = +2
Query: 59 KAPAKFEMFGSLKFVLLLGIIYLCKAAEEDVLDLTDSDFSAVLSQHDTALVMFYAPWCGH 238
+ P F +F + F L+ G+ + ++L +F + +LV+FYAPWCG+
Sbjct: 4 RIPTLFTLFLAC-FSLVSGVFGYSPMFGSNTIELNSKNFRKFVKAKGPSLVVFYAPWCGY 62
Query: 239 CKRL 250
CK+L
Sbjct: 63 CKKL 66
Score = 41.1 bits (92), Expect = 1e-04
Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 6/68 (8%)
Frame = +3
Query: 309 TKVDC-TEGGKSTCEQFSVSGYPTLKIF---RKGE--LSSEYNGPRESNGIVKYMRAQVG 470
T VDC + ++ C Q+ V G+PT+K+ KG S++YNG R + K++ +
Sbjct: 84 TAVDCDADQNRAVCSQYQVQGFPTIKLVYPSSKGSSLSSTDYNGDRSYKSLQKFVSDSI- 142
Query: 471 PSSKELLT 494
PS ++LT
Sbjct: 143 PSKVKILT 150
>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 359
Score = 36.7 bits (81), Expect = 0.003
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 146 DVLDLTDSDFS-AVLSQHDTALVMFYAPWCGHCKRL 250
+V++L +F V+ LV FYA WCG+CKRL
Sbjct: 141 NVVELDSLNFDKVVMDDKKDVLVEFYADWCGYCKRL 176
Score = 34.7 bits (76), Expect = 0.013
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = +2
Query: 203 ALVMFYAPWCGHCKRL 250
AL+ FYA WCGHCK L
Sbjct: 42 ALIEFYATWCGHCKSL 57
>SPBC12D12.07c |trx2||mitochondrial thioredoxin
Trx2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 121
Score = 33.5 bits (73), Expect = 0.029
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2
Query: 170 DFSAVLSQHDTALVMFYAPWCGHCKRLK 253
D++ +S +V FYA WCG CK LK
Sbjct: 27 DYNTRISADKVTVVDFYADWCGPCKYLK 54
>SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 103
Score = 32.7 bits (71), Expect = 0.051
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 167 SDFSAVLSQHDTALVMFYAPWCGHCKRL 250
S+F +++ Q +V F+A WCG CK +
Sbjct: 9 SEFKSIVCQDKLVVVDFFATWCGPCKAI 36
>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 726
Score = 31.5 bits (68), Expect = 0.12
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +2
Query: 158 LTDSDFSAVLSQHDTALVMFYAPWCGHCKRL 250
LTD+D + +S+ T + +Y P CG CKRL
Sbjct: 31 LTDNDLESEVSK-GTWFIKYYLPSCGACKRL 60
Score = 26.6 bits (56), Expect = 3.4
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 336 KSTCEQFSVSGYPTLKIFRKGELSSEYNGPRESNGIVKY 452
K C+Q+S+ +PT +F K E EY G +V +
Sbjct: 342 KRACKQYSIQYFPTF-LFFKEEAFVEYVGLPNEGDLVSF 379
>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
peptidyl-prolyl cis-trans isomerase
Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 610
Score = 29.5 bits (63), Expect = 0.48
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = -1
Query: 651 FSRTSLAEE*AKVTSSLNLSAVLRNSPFRSDSFSKNPT 538
F+R SL ++ K ++ +L + N+P +SF K+PT
Sbjct: 366 FTRLSLYQQAPKKSNLPSLDVIASNNPLVEESFQKDPT 403
>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 27.5 bits (58), Expect = 1.9
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +2
Query: 206 LVMFYAPWCGHCKRLKQ 256
L+ FYAPW CK++ Q
Sbjct: 24 LLNFYAPWAAPCKQMNQ 40
>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 743
Score = 26.6 bits (56), Expect = 3.4
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -1
Query: 642 TSLAEE*AKVTSSLNLSAVLRNSPFRSD-SFSKNPTTTTSSLEVKAQNQ 499
++ +E +++TS NL + N PF SD +P T +E Q Q
Sbjct: 627 STASESKSEITSHQNLHTIPINKPFTSDRPLYSSPNDTLERVETGNQGQ 675
>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 640
Score = 26.6 bits (56), Expect = 3.4
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 150 FSILQIPTFRLFYLNMIQPWSCF 218
F LQ+ FR + N+++PW CF
Sbjct: 208 FYCLQLQMFRKMH-NIVRPWDCF 229
>SPAC6F6.11c |||pyridoxine-pyridoxal-pyridoxamine kinase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 25.8 bits (54), Expect = 5.9
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +2
Query: 593 DKLREEVTFAHSSANEVLEKT 655
DKL++ V A SS +EV++KT
Sbjct: 248 DKLKKSVEMALSSVHEVIQKT 268
>SPBC16H5.11c |skb1|rmt5|type II protein arginine
N-methyltransferase Skb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 645
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Frame = +2
Query: 230 CGHCKRLKQSTL*PPAC*RPMTL--RW 304
CG+ RLK + PPAC P+ L RW
Sbjct: 186 CGYHPRLKVALELPPACSPPIELVNRW 212
>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1489
Score = 25.4 bits (53), Expect = 7.8
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -3
Query: 469 PTWARMYLTMPLDSLGPLYSEESSPFLKIFS 377
P ++Y+T+ D +G E +SP +K+ S
Sbjct: 1414 PQKEKLYITISADEVGKFILEATSPTVKVSS 1444
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,771,807
Number of Sequences: 5004
Number of extensions: 54801
Number of successful extensions: 156
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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