Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30713
         (619 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   127   1e-30
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   122   4e-29
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    33   0.025
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc...    26   5.0  
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2...    26   5.0  
SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces pom...    25   6.6  
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ...    25   6.6  
SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase Byr2...    25   8.8  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    25   8.8  

>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  127 bits (306), Expect = 1e-30
 Identities = 63/87 (72%), Positives = 68/87 (78%)
 Frame = +2

Query: 248 PRYVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 427
           P  V VISSRP+G RAVLKFAAHTGAT IAGRFTPG FTN I   +REPRL+IV DP  D
Sbjct: 74  PADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTDPRAD 133

Query: 428 HQPITEASYVNIPVIALCNTDSPLRFV 508
            Q I EAS+VNIPVIALC+TDS L  V
Sbjct: 134 AQAIKEASFVNIPVIALCDTDSILNHV 160



 Score = 89.0 bits (211), Expect = 5e-19
 Identities = 37/66 (56%), Positives = 52/66 (78%)
 Frame = +3

Query: 57  VLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVV 236
           VL   ++D+  +LAA +H+G++N+  +ME YV+KRR+DG H+INL +TWEKLVLAAR + 
Sbjct: 10  VLNATDDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIA 69

Query: 237 AIENPA 254
            IENPA
Sbjct: 70  TIENPA 75



 Score = 50.0 bits (114), Expect = 3e-07
 Identities = 23/34 (67%), Positives = 26/34 (76%)
 Frame = +1

Query: 508 DIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPR 609
           D+AIP N K   SIGL W+LLAREVLRLRG + R
Sbjct: 161 DVAIPINNKGYKSIGLAWYLLAREVLRLRGNISR 194


>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  122 bits (294), Expect = 4e-29
 Identities = 59/89 (66%), Positives = 68/89 (76%)
 Frame = +2

Query: 248 PRYVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 427
           P  V V+S+R +G RAVLKFAAHTGAT IAGRFTPG FTN I   +REPRL++V DP  D
Sbjct: 73  PADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIVVTDPRAD 132

Query: 428 HQPITEASYVNIPVIALCNTDSPLRFVTL 514
            Q I EAS+VNIPVIALC+TDS L  V +
Sbjct: 133 AQAIKEASFVNIPVIALCDTDSILNHVDI 161



 Score = 89.0 bits (211), Expect = 5e-19
 Identities = 36/70 (51%), Positives = 54/70 (77%)
 Frame = +3

Query: 45  GGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAA 224
           G  ++L   +ED+ ++LAA  H+G++N+  +M+ YV+KRR+DG H++NL +TWEKLVLAA
Sbjct: 5   GRPNILNATDEDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAA 64

Query: 225 RAVVAIENPA 254
           R +  IENPA
Sbjct: 65  RVIATIENPA 74



 Score = 52.4 bits (120), Expect = 5e-08
 Identities = 24/34 (70%), Positives = 27/34 (79%)
 Frame = +1

Query: 508 DIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPR 609
           DIAIP N K   SIGL+W+LLAREVLR+RG L R
Sbjct: 160 DIAIPTNNKGRKSIGLIWYLLAREVLRVRGTLSR 193


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 33.5 bits (73), Expect = 0.025
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +2

Query: 392 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVT 511
           P L+++L+P ++     EA   ++P I + +TD+  R VT
Sbjct: 180 PDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVT 219


>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1088

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = -3

Query: 263 RTHSGVLDGYDSTSSQ--NKFFPGTTQVDHMGTISTSFVDIGLHLEVN 126
           RT + +    DSTS    NK+  G   V  +   S S  DIGLH E +
Sbjct: 345 RTSAEMFTTVDSTSRAIVNKYSLGNN-VSTVNPFSKSLYDIGLHAETD 391


>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 474

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = -1

Query: 442 SNGLMVLCRVQYNQETRFTECSLNLVSKSTWCETPRNRRSTGVRGKLQYSTLTEGP 275
           S GL  L R +   E  F +     +S + W  T +   + G+RG   ++   EGP
Sbjct: 169 SEGLEDLIRAE--AEKYFAKADCVCISDTYWLGTKKPVLTYGLRGVCYFNITVEGP 222


>SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 10/29 (34%), Positives = 12/29 (41%)
 Frame = +2

Query: 179 CDQLASYLGKTCSGCSCCRSHREPRYVFV 265
           CD    YL   C   + C   R  RY F+
Sbjct: 201 CDNCVEYLDHHCIWLNTCIGRRNYRYYFI 229


>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 509

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -3

Query: 257 HSGVLDGYDSTSSQNKFFPGTTQVDHMG 174
           H+ + + Y   S+QN F PG T     G
Sbjct: 476 HASLSNSYAEPSTQNSFIPGLTSKSQDG 503


>SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase
           Byr2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 659

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
 Frame = -3

Query: 188 VDHMGTISTSFVDIGLHLEVNIFCPKMGGCSKHF-GDIFLVEGEHV*SSRH 39
           VD+ G I  S   I   LE+N    K GG    F G  F +  E V  + H
Sbjct: 530 VDNKGKIKISDFGISKKLELNSTSTKTGGARPSFQGSSFWMAPEVVKQTMH 580


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 148  MSTNDVLMVPM*STCVVPGKNLFWLLVL 231
            M+ N V  + +  T   PG N FW L++
Sbjct: 920  MTLNPVFQIGLNGTTHSPGNNSFWPLII 947


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,807,313
Number of Sequences: 5004
Number of extensions: 61683
Number of successful extensions: 128
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)