BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30713 (619 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0) 156 2e-38 SB_57493| Best HMM Match : Surf_Ag_VNR (HMM E-Value=0.00037) 31 0.99 SB_99| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.99 SB_49472| Best HMM Match : BDS_I_II (HMM E-Value=1.5) 30 1.7 SB_58902| Best HMM Match : TNFR_c6 (HMM E-Value=0.032) 29 2.3 SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0 SB_54185| Best HMM Match : Gal_Lectin (HMM E-Value=2.3) 29 4.0 SB_43606| Best HMM Match : Y_phosphatase (HMM E-Value=3.9e-26) 29 4.0 SB_25361| Best HMM Match : Cadherin (HMM E-Value=0) 28 7.0 SB_49920| Best HMM Match : MANEC (HMM E-Value=0.73) 27 9.2 SB_44668| Best HMM Match : 7tm_1 (HMM E-Value=6.1e-05) 27 9.2 SB_16496| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2 SB_3365| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2 >SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0) Length = 328 Score = 156 bits (378), Expect = 2e-38 Identities = 72/87 (82%), Positives = 78/87 (89%) Frame = +2 Query: 248 PRYVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 427 P V VIS+RP+GQRA+LK+A+HTGATPIAGRFTPG FTNQIQAAFREPRLLIV DP D Sbjct: 71 PADVCVISARPYGQRAILKYASHTGATPIAGRFTPGTFTNQIQAAFREPRLLIVCDPRID 130 Query: 428 HQPITEASYVNIPVIALCNTDSPLRFV 508 HQP+TEASYVNIPVIA CNTDSPLR V Sbjct: 131 HQPVTEASYVNIPVIAFCNTDSPLRHV 157 Score = 111 bits (266), Expect = 6e-25 Identities = 49/72 (68%), Positives = 60/72 (83%) Frame = +3 Query: 39 MSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVL 218 MSGGLD+L L EEDV K LAA HLGA N +FQME YVYKR++DG ++IN+++TWEKL+L Sbjct: 1 MSGGLDILQLKEEDVVKFLAAGVHLGANNCDFQMEDYVYKRKSDGVNIINVKKTWEKLLL 60 Query: 219 AARAVVAIENPA 254 AAR +V IENPA Sbjct: 61 AARIIVTIENPA 72 Score = 60.9 bits (141), Expect = 8e-10 Identities = 26/39 (66%), Positives = 31/39 (79%) Frame = +1 Query: 493 PTKICDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPR 609 P + D+AIPCN K HSIGLM+WLLAREVLR+RG + R Sbjct: 153 PLRHVDVAIPCNNKGIHSIGLMFWLLAREVLRMRGSISR 191 >SB_57493| Best HMM Match : Surf_Ag_VNR (HMM E-Value=0.00037) Length = 432 Score = 30.7 bits (66), Expect = 0.99 Identities = 15/32 (46%), Positives = 22/32 (68%) Frame = +2 Query: 410 LDPAQDHQPITEASYVNIPVIALCNTDSPLRF 505 LDP +HQPIT+ + I ++A TD+PL+F Sbjct: 119 LDPDVEHQPITDRAEACICLVA---TDAPLKF 147 >SB_99| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 965 Score = 30.7 bits (66), Expect = 0.99 Identities = 19/55 (34%), Positives = 27/55 (49%) Frame = -1 Query: 484 VAQSNHRNVDI*SFSNGLMVLCRVQYNQETRFTECSLNLVSKSTWCETPRNRRST 320 V SN +V + N + CR Q NQ T FT + ++ C+T RN RS+ Sbjct: 876 VYNSNKGSVRVHPSDNSGSLNCRKQTNQTTAFTWPGVVNLTWKRGCQTMRNMRSS 930 >SB_49472| Best HMM Match : BDS_I_II (HMM E-Value=1.5) Length = 315 Score = 29.9 bits (64), Expect = 1.7 Identities = 11/22 (50%), Positives = 14/22 (63%) Frame = +1 Query: 541 HSIGLMWWLLAREVLRLRGVLP 606 H G +WW+L E LR + VLP Sbjct: 46 HDDGSVWWVLTSESLRAKAVLP 67 >SB_58902| Best HMM Match : TNFR_c6 (HMM E-Value=0.032) Length = 397 Score = 29.5 bits (63), Expect = 2.3 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%) Frame = +1 Query: 391 TSSLDCIGPCTRPSTHY*SFICQHSCDCFVQHRL---PTKICDIAIPC 525 TSSLD + PC+ S H+ + + C C+ +++ K C I PC Sbjct: 331 TSSLDTLAPCSF-SCHFACDVNTNQCICYYGYQMSDNKCKACTINEPC 377 >SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1300 Score = 29.1 bits (62), Expect = 3.0 Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 1/70 (1%) Frame = +1 Query: 334 CGAFHTRCFY*PDSSCIP*TSSLDCIGPCTRPSTHY*SFICQHSCDCFVQHRLPTKICDI 513 C H+ C SSCI S+ DCI C+ PS F C+ +C T++C+ Sbjct: 866 CKKCHSSC-----SSCIG-PSANDCI-TCSDPSNALIGFTCKANCTPGQFKNTATRVCEN 918 Query: 514 AIP-CNTKSS 540 P C + SS Sbjct: 919 CHPTCASCSS 928 >SB_54185| Best HMM Match : Gal_Lectin (HMM E-Value=2.3) Length = 225 Score = 28.7 bits (61), Expect = 4.0 Identities = 18/53 (33%), Positives = 25/53 (47%) Frame = -1 Query: 484 VAQSNHRNVDI*SFSNGLMVLCRVQYNQETRFTECSLNLVSKSTWCETPRNRR 326 V SN +V + N + CR Q NQ T FT + ++ C+T RN R Sbjct: 155 VYNSNKGSVRVHPSDNSGSLNCRKQTNQTTAFTWPGVVNLTWKRGCQTMRNMR 207 >SB_43606| Best HMM Match : Y_phosphatase (HMM E-Value=3.9e-26) Length = 280 Score = 28.7 bits (61), Expect = 4.0 Identities = 18/53 (33%), Positives = 25/53 (47%) Frame = -1 Query: 484 VAQSNHRNVDI*SFSNGLMVLCRVQYNQETRFTECSLNLVSKSTWCETPRNRR 326 V SN +V + N + CR Q NQ T FT + ++ C+T RN R Sbjct: 196 VYNSNKGSVRVHPSDNSGSLNCRKQTNQTTAFTWPGVVNLTWKRGCQTMRNMR 248 >SB_25361| Best HMM Match : Cadherin (HMM E-Value=0) Length = 4833 Score = 27.9 bits (59), Expect = 7.0 Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 5/82 (6%) Frame = +2 Query: 269 SSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAA----FREPRLLIVLDPAQDHQP 436 S + GQ ++K++ G +A F + T ++ A F +L + AQDH Sbjct: 1179 SDKDIGQNGLIKYSISNGN--LAAMFDVESATGRLIVAKSLDFETTQLYELTITAQDHGL 1236 Query: 437 ITEASYVNIPVIAL-CNTDSPL 499 I +S VN+ V L N ++PL Sbjct: 1237 IPLSSTVNVTVNVLDVNDNAPL 1258 >SB_49920| Best HMM Match : MANEC (HMM E-Value=0.73) Length = 139 Score = 27.5 bits (58), Expect = 9.2 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%) Frame = +2 Query: 149 CLQTTC*WYPCD-QLASYLGKTCSGCSC 229 C+Q C CD + SY G+TC G +C Sbjct: 87 CVQRCCDVLHCDLAMMSYGGRTCYGVAC 114 >SB_44668| Best HMM Match : 7tm_1 (HMM E-Value=6.1e-05) Length = 1604 Score = 27.5 bits (58), Expect = 9.2 Identities = 9/27 (33%), Positives = 15/27 (55%) Frame = +1 Query: 265 HLITALRSACCTEVCRAHRCYAYCGAF 345 + + + R + T++ R HRC YC F Sbjct: 1549 YALVSPRESIATDIHRVHRCIGYCPQF 1575 >SB_16496| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1275 Score = 27.5 bits (58), Expect = 9.2 Identities = 12/31 (38%), Positives = 18/31 (58%) Frame = +3 Query: 204 EKLVLAARAVVAIENPAMCSSSHHGPSVSVL 296 +K+ LA RA VAI+ C + +HG V+ Sbjct: 482 DKVYLATRATVAIKIVLQCDTRYHGQQNKVI 512 >SB_3365| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 335 Score = 27.5 bits (58), Expect = 9.2 Identities = 12/31 (38%), Positives = 18/31 (58%) Frame = +3 Query: 204 EKLVLAARAVVAIENPAMCSSSHHGPSVSVL 296 +K+ LA RA VAI+ C + +HG V+ Sbjct: 267 DKVYLATRATVAIKIVLQCDTRYHGQQNKVI 297 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 22,507,138 Number of Sequences: 59808 Number of extensions: 521445 Number of successful extensions: 1349 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 1180 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1344 length of database: 16,821,457 effective HSP length: 79 effective length of database: 12,096,625 effective search space used: 1524174750 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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