Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30713
(619 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0) 156 2e-38
SB_57493| Best HMM Match : Surf_Ag_VNR (HMM E-Value=0.00037) 31 0.99
SB_99| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.99
SB_49472| Best HMM Match : BDS_I_II (HMM E-Value=1.5) 30 1.7
SB_58902| Best HMM Match : TNFR_c6 (HMM E-Value=0.032) 29 2.3
SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_54185| Best HMM Match : Gal_Lectin (HMM E-Value=2.3) 29 4.0
SB_43606| Best HMM Match : Y_phosphatase (HMM E-Value=3.9e-26) 29 4.0
SB_25361| Best HMM Match : Cadherin (HMM E-Value=0) 28 7.0
SB_49920| Best HMM Match : MANEC (HMM E-Value=0.73) 27 9.2
SB_44668| Best HMM Match : 7tm_1 (HMM E-Value=6.1e-05) 27 9.2
SB_16496| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_3365| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
>SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)
Length = 328
Score = 156 bits (378), Expect = 2e-38
Identities = 72/87 (82%), Positives = 78/87 (89%)
Frame = +2
Query: 248 PRYVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 427
P V VIS+RP+GQRA+LK+A+HTGATPIAGRFTPG FTNQIQAAFREPRLLIV DP D
Sbjct: 71 PADVCVISARPYGQRAILKYASHTGATPIAGRFTPGTFTNQIQAAFREPRLLIVCDPRID 130
Query: 428 HQPITEASYVNIPVIALCNTDSPLRFV 508
HQP+TEASYVNIPVIA CNTDSPLR V
Sbjct: 131 HQPVTEASYVNIPVIAFCNTDSPLRHV 157
Score = 111 bits (266), Expect = 6e-25
Identities = 49/72 (68%), Positives = 60/72 (83%)
Frame = +3
Query: 39 MSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVL 218
MSGGLD+L L EEDV K LAA HLGA N +FQME YVYKR++DG ++IN+++TWEKL+L
Sbjct: 1 MSGGLDILQLKEEDVVKFLAAGVHLGANNCDFQMEDYVYKRKSDGVNIINVKKTWEKLLL 60
Query: 219 AARAVVAIENPA 254
AAR +V IENPA
Sbjct: 61 AARIIVTIENPA 72
Score = 60.9 bits (141), Expect = 8e-10
Identities = 26/39 (66%), Positives = 31/39 (79%)
Frame = +1
Query: 493 PTKICDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPR 609
P + D+AIPCN K HSIGLM+WLLAREVLR+RG + R
Sbjct: 153 PLRHVDVAIPCNNKGIHSIGLMFWLLAREVLRMRGSISR 191
>SB_57493| Best HMM Match : Surf_Ag_VNR (HMM E-Value=0.00037)
Length = 432
Score = 30.7 bits (66), Expect = 0.99
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +2
Query: 410 LDPAQDHQPITEASYVNIPVIALCNTDSPLRF 505
LDP +HQPIT+ + I ++A TD+PL+F
Sbjct: 119 LDPDVEHQPITDRAEACICLVA---TDAPLKF 147
>SB_99| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 965
Score = 30.7 bits (66), Expect = 0.99
Identities = 19/55 (34%), Positives = 27/55 (49%)
Frame = -1
Query: 484 VAQSNHRNVDI*SFSNGLMVLCRVQYNQETRFTECSLNLVSKSTWCETPRNRRST 320
V SN +V + N + CR Q NQ T FT + ++ C+T RN RS+
Sbjct: 876 VYNSNKGSVRVHPSDNSGSLNCRKQTNQTTAFTWPGVVNLTWKRGCQTMRNMRSS 930
>SB_49472| Best HMM Match : BDS_I_II (HMM E-Value=1.5)
Length = 315
Score = 29.9 bits (64), Expect = 1.7
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 541 HSIGLMWWLLAREVLRLRGVLP 606
H G +WW+L E LR + VLP
Sbjct: 46 HDDGSVWWVLTSESLRAKAVLP 67
>SB_58902| Best HMM Match : TNFR_c6 (HMM E-Value=0.032)
Length = 397
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Frame = +1
Query: 391 TSSLDCIGPCTRPSTHY*SFICQHSCDCFVQHRL---PTKICDIAIPC 525
TSSLD + PC+ S H+ + + C C+ +++ K C I PC
Sbjct: 331 TSSLDTLAPCSF-SCHFACDVNTNQCICYYGYQMSDNKCKACTINEPC 377
>SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1300
Score = 29.1 bits (62), Expect = 3.0
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = +1
Query: 334 CGAFHTRCFY*PDSSCIP*TSSLDCIGPCTRPSTHY*SFICQHSCDCFVQHRLPTKICDI 513
C H+ C SSCI S+ DCI C+ PS F C+ +C T++C+
Sbjct: 866 CKKCHSSC-----SSCIG-PSANDCI-TCSDPSNALIGFTCKANCTPGQFKNTATRVCEN 918
Query: 514 AIP-CNTKSS 540
P C + SS
Sbjct: 919 CHPTCASCSS 928
>SB_54185| Best HMM Match : Gal_Lectin (HMM E-Value=2.3)
Length = 225
Score = 28.7 bits (61), Expect = 4.0
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = -1
Query: 484 VAQSNHRNVDI*SFSNGLMVLCRVQYNQETRFTECSLNLVSKSTWCETPRNRR 326
V SN +V + N + CR Q NQ T FT + ++ C+T RN R
Sbjct: 155 VYNSNKGSVRVHPSDNSGSLNCRKQTNQTTAFTWPGVVNLTWKRGCQTMRNMR 207
>SB_43606| Best HMM Match : Y_phosphatase (HMM E-Value=3.9e-26)
Length = 280
Score = 28.7 bits (61), Expect = 4.0
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = -1
Query: 484 VAQSNHRNVDI*SFSNGLMVLCRVQYNQETRFTECSLNLVSKSTWCETPRNRR 326
V SN +V + N + CR Q NQ T FT + ++ C+T RN R
Sbjct: 196 VYNSNKGSVRVHPSDNSGSLNCRKQTNQTTAFTWPGVVNLTWKRGCQTMRNMR 248
>SB_25361| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 4833
Score = 27.9 bits (59), Expect = 7.0
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Frame = +2
Query: 269 SSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAA----FREPRLLIVLDPAQDHQP 436
S + GQ ++K++ G +A F + T ++ A F +L + AQDH
Sbjct: 1179 SDKDIGQNGLIKYSISNGN--LAAMFDVESATGRLIVAKSLDFETTQLYELTITAQDHGL 1236
Query: 437 ITEASYVNIPVIAL-CNTDSPL 499
I +S VN+ V L N ++PL
Sbjct: 1237 IPLSSTVNVTVNVLDVNDNAPL 1258
>SB_49920| Best HMM Match : MANEC (HMM E-Value=0.73)
Length = 139
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = +2
Query: 149 CLQTTC*WYPCD-QLASYLGKTCSGCSC 229
C+Q C CD + SY G+TC G +C
Sbjct: 87 CVQRCCDVLHCDLAMMSYGGRTCYGVAC 114
>SB_44668| Best HMM Match : 7tm_1 (HMM E-Value=6.1e-05)
Length = 1604
Score = 27.5 bits (58), Expect = 9.2
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = +1
Query: 265 HLITALRSACCTEVCRAHRCYAYCGAF 345
+ + + R + T++ R HRC YC F
Sbjct: 1549 YALVSPRESIATDIHRVHRCIGYCPQF 1575
>SB_16496| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1275
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 204 EKLVLAARAVVAIENPAMCSSSHHGPSVSVL 296
+K+ LA RA VAI+ C + +HG V+
Sbjct: 482 DKVYLATRATVAIKIVLQCDTRYHGQQNKVI 512
>SB_3365| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 335
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 204 EKLVLAARAVVAIENPAMCSSSHHGPSVSVL 296
+K+ LA RA VAI+ C + +HG V+
Sbjct: 267 DKVYLATRATVAIKIVLQCDTRYHGQQNKVI 297
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,507,138
Number of Sequences: 59808
Number of extensions: 521445
Number of successful extensions: 1349
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1344
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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