Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30713
         (619 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identi...   127   7e-30
At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identi...   122   3e-28
At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identi...   122   3e-28
At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RP...    34   0.066
At2g22340.1 68415.m02651 hypothetical protein                          33   0.20 
At2g07020.1 68415.m00803 protein kinase family protein contains ...    30   1.4  
At4g07990.1 68417.m01280 DNAJ heat shock N-terminal domain-conta...    27   7.5  

>At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identical
           to laminin receptor-like protein GB:U01955 [Arabidopsis
           thaliana]; identical to cDNA laminin receptor homologue
           GI:16379
          Length = 298

 Score =  127 bits (306), Expect = 7e-30
 Identities = 57/89 (64%), Positives = 70/89 (78%)
 Frame = +2

Query: 248 PRYVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 427
           P+ + V S+RP+GQRAVLKFA +TGA  IAGR TPG FTNQ+Q +F EPRLLI+ DP  D
Sbjct: 75  PQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTD 134

Query: 428 HQPITEASYVNIPVIALCNTDSPLRFVTL 514
           HQPI E +  NIP+IA C+TDSP+RFV +
Sbjct: 135 HQPIKEGALGNIPIIAFCDTDSPMRFVDI 163



 Score = 85.4 bits (202), Expect = 3e-17
 Identities = 38/64 (59%), Positives = 47/64 (73%)
 Frame = +3

Query: 60  LALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVA 239
           L+  E DV  M AA  HLG +N N+QME YV+KRR DG ++ NL +TWEKL +AAR +VA
Sbjct: 12  LSQKEADVRMMCAAEVHLGTKNCNYQMERYVFKRRNDGIYIFNLGKTWEKLQMAARVIVA 71

Query: 240 IENP 251
           IENP
Sbjct: 72  IENP 75



 Score = 51.2 bits (117), Expect = 5e-07
 Identities = 21/42 (50%), Positives = 28/42 (66%)
 Frame = +1

Query: 493 PTKICDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQR 618
           P +  DI IP N K  HSIG ++WLLAR VL++RG +   Q+
Sbjct: 157 PMRFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIAAGQK 198


>At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 280

 Score =  122 bits (293), Expect = 3e-28
 Identities = 55/89 (61%), Positives = 67/89 (75%)
 Frame = +2

Query: 248 PRYVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 427
           P+ + V S+RP+GQRAVLKFA +TG   IAGR TPG FTNQ+Q +F EPRLLI+ DP  D
Sbjct: 76  PKDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTD 135

Query: 428 HQPITEASYVNIPVIALCNTDSPLRFVTL 514
           HQPI E +  NIP IA C+TDSP+ FV +
Sbjct: 136 HQPIKEGALGNIPTIAFCDTDSPMGFVDI 164



 Score = 85.0 bits (201), Expect = 4e-17
 Identities = 36/60 (60%), Positives = 47/60 (78%)
 Frame = +3

Query: 72  EEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENP 251
           E D+  ML+A  HLG +N N+QME YV+KRR DG ++INL +TW+KL +AAR +VAIENP
Sbjct: 17  EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENP 76



 Score = 48.4 bits (110), Expect = 4e-06
 Identities = 21/42 (50%), Positives = 27/42 (64%)
 Frame = +1

Query: 493 PTKICDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQR 618
           P    DI IP N K  HSIG ++WLLAR VL++RG +   Q+
Sbjct: 158 PMGFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTILAAQK 199


>At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 332

 Score =  122 bits (293), Expect = 3e-28
 Identities = 55/89 (61%), Positives = 67/89 (75%)
 Frame = +2

Query: 248 PRYVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 427
           P+ + V S+RP+GQRAVLKFA +TG   IAGR TPG FTNQ+Q +F EPRLLI+ DP  D
Sbjct: 76  PKDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTD 135

Query: 428 HQPITEASYVNIPVIALCNTDSPLRFVTL 514
           HQPI E +  NIP IA C+TDSP+ FV +
Sbjct: 136 HQPIKEGALGNIPTIAFCDTDSPMGFVDI 164



 Score = 85.0 bits (201), Expect = 4e-17
 Identities = 36/60 (60%), Positives = 47/60 (78%)
 Frame = +3

Query: 72  EEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENP 251
           E D+  ML+A  HLG +N N+QME YV+KRR DG ++INL +TW+KL +AAR +VAIENP
Sbjct: 17  EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENP 76



 Score = 48.4 bits (110), Expect = 4e-06
 Identities = 21/42 (50%), Positives = 27/42 (64%)
 Frame = +1

Query: 493 PTKICDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQR 618
           P    DI IP N K  HSIG ++WLLAR VL++RG +   Q+
Sbjct: 158 PMGFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTILAAQK 199


>At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RPS2)
           identical to SP|Q9GCB9 Mitochondrial ribosomal protein
           S2 {Arabidopsis thaliana}; contains Pfam profile
           PF00318: ribosomal protein S2
          Length = 219

 Score = 34.3 bits (75), Expect = 0.066
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = +2

Query: 392 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVTLLSHATPS 535
           P  ++V D  +    I EAS + IPV+A+ + + PL F   +++  P+
Sbjct: 131 PDCVVVFDSERKSSVILEASKLQIPVVAIVDPNVPLEFFEKITYPVPA 178


>At2g22340.1 68415.m02651 hypothetical protein
          Length = 358

 Score = 32.7 bits (71), Expect = 0.20
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +2

Query: 110 SWGRKC*LPDGDLCLQTTC*WYPCDQLASYLGKTCSGCSC 229
           SW     LP+GD  +Q  C WY   +  S +G+  +   C
Sbjct: 188 SWTEASLLPEGDCFIQLNCLWYKPKEDTSVMGRKMASSDC 227


>At2g07020.1 68415.m00803 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 700

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +2

Query: 347 TPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEA 448
           TP   TNQ++ A  E     +LDP     PI EA
Sbjct: 620 TPMGLTNQVEKAIEEGNFAKILDPLVTDWPIEEA 653


>At4g07990.1 68417.m01280 DNAJ heat shock N-terminal
           domain-containing protein similar to SP|Q9QYI5 DnaJ
           homolog subfamily B member 10 Mus musculus ; contains
           Pfam profile PF00226 DnaJ domain
          Length = 347

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
 Frame = +2

Query: 236 SHREPRYVFVISSRPFGQRAVLKFAAHTGATPIA-GRFTPGAFTN-QIQAAFREPRLLIV 409
           SHR  R        P  QR V   + H     ++  R TP  +T  +I+ AFRE  L   
Sbjct: 261 SHRNQR---TNHQEPSDQRRVYPLSHHYSVLGLSRSRATP--YTEAEIKKAFREKALEFH 315

Query: 410 LDPAQDHQPITEASYVNI 463
            D  QD++ + EA +  +
Sbjct: 316 PDQNQDNKIVAEAKFKEV 333


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,195,201
Number of Sequences: 28952
Number of extensions: 346312
Number of successful extensions: 796
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)