Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30712
         (551 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...    50   2e-07
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom...    26   3.2  
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom...    25   5.6  
SPAC5H10.05c |||FAD binding oxidoreductasde |Schizosaccharomyces...    25   9.8  

>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 50.4 bits (115), Expect = 2e-07
 Identities = 30/61 (49%), Positives = 38/61 (62%)
 Frame = -3

Query: 522 KCQAKKVRQTSTFGGVITPWLSCLFYQVGRG*WGNKIGKPPKVLCKVTGKCGCVTVRLIP 343
           KC AK+V  T+  G +I   LS +   + RG WG  +G P  V  KV+GKCG VTVRL+P
Sbjct: 115 KC-AKEVA-TAIRGAIIMGKLSIM--PIRRGYWGTALGDPHTVPVKVSGKCGSVTVRLVP 170

Query: 342 A 340
           A
Sbjct: 171 A 171



 Score = 35.1 bits (77), Expect = 0.007
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = -2

Query: 301 RSFFQMVGVQDCYT*AVVKLATLGNFAKA 215
           + F Q+ G++DCYT +     TLGNF KA
Sbjct: 184 KRFLQLAGIEDCYTQSRGSTKTLGNFVKA 212



 Score = 30.7 bits (66), Expect = 0.15
 Identities = 21/59 (35%), Positives = 26/59 (44%)
 Frame = -1

Query: 332 GTGIVSAPVPKKLLPDGWCTGLLHLSRG*IGHLGKFC*SPHMLPLPKTYG*LTLDLWRD 156
           G G+V+APV K+ L           SRG    LG F           TYG LT +LW +
Sbjct: 174 GAGLVAAPVTKRFLQLAGIEDCYTQSRGSTKTLGNFV-KAAFAAASLTYGILTPNLWAE 231


>SPAC3G9.14 |sak1||transcriptional repressor
           Sak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 766

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 284 HLEEAS*ELAQTQFQYHQSAGISRTVTQPH 373
           +L+++  EL Q    +H  AGIS++   PH
Sbjct: 678 YLDDSYDELEQHHANFHNKAGISQSNIPPH 707


>SPAC926.04c |hsp90|swo1|heat shock protein
           Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 704

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 19/55 (34%), Positives = 25/55 (45%)
 Frame = +2

Query: 200 MAAYVGFSKISQGGQFNHGSGVAVLYTNHLEEAS*ELAQTQFQYHQSAGISRTVT 364
           M A    + IS  GQF  G   A L  + ++  S      Q+ +  SAG S TVT
Sbjct: 106 MEAAASGADISMIGQFGVGFYSAYLVADKVQVVSKHNDDEQYIWESSAGGSFTVT 160


>SPAC5H10.05c |||FAD binding oxidoreductasde |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 196

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +3

Query: 294 KLLRNWRRHNSSTTSRQESAGLLHNHTFRLPC 389
           +L  N  R + + T      GLLH H + + C
Sbjct: 91  QLYANDGRSSKNPTQNYGKGGLLHEHRYMISC 122


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,376,053
Number of Sequences: 5004
Number of extensions: 51368
Number of successful extensions: 135
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)