Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30712
(551 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0756 + 5819367-5820038,5820847-5821005 64 9e-11
03_06_0386 + 33555682-33556344,33557138-33557299 62 3e-10
12_01_0342 + 2634678-2635937 30 1.4
12_01_0334 - 2573375-2574634 30 1.4
05_03_0218 - 10437377-10437622,10437896-10438141,10438528-104386... 28 5.7
06_03_1309 + 29223197-29223240,29223358-29223592,29223695-292237... 27 7.5
02_04_0120 - 19932330-19932366,19932562-19932781,19932876-199329... 27 7.5
12_02_0800 + 23299674-23299678,23299714-23299791,23299876-232999... 27 10.0
10_01_0030 - 386008-388056,388166-388360,388931-389062,389167-38... 27 10.0
07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871 27 10.0
06_01_0469 + 3322886-3323564,3324033-3324953,3325025-3325155,332... 27 10.0
05_03_0428 + 13899295-13899669 27 10.0
03_02_0860 - 11864510-11864732,11864867-11865191,11866213-11867779 27 10.0
01_06_0563 - 30266533-30266846,30266935-30267274 27 10.0
>07_01_0756 + 5819367-5820038,5820847-5821005
Length = 276
Score = 63.7 bits (148), Expect = 9e-11
Identities = 36/61 (59%), Positives = 42/61 (68%)
Frame = -3
Query: 522 KCQAKKVRQTSTFGGVITPWLSCLFYQVGRG*WGNKIGKPPKVLCKVTGKCGCVTVRLIP 343
KC AK+V T+ G +I LS + V RG WGNKIGKP V CKVTGKCG VTVR++P
Sbjct: 128 KC-AKEVA-TAIRGAIILAKLSVV--PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVP 183
Query: 342 A 340
A
Sbjct: 184 A 184
Score = 46.4 bits (105), Expect = 2e-05
Identities = 29/70 (41%), Positives = 38/70 (54%)
Frame = -1
Query: 332 GTGIVSAPVPKKLLPDGWCTGLLHLSRG*IGHLGKFC*SPHMLPLPKTYG*LTLDLWRDI 153
G+GIV+A VPKK+L + SRG LG F + L KTYG LT D WR+
Sbjct: 187 GSGIVAAHVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDC-LMKTYGFLTPDFWRET 245
Query: 152 RLTKSAY*EF 123
R K+ + E+
Sbjct: 246 RFIKTPFQEY 255
>03_06_0386 + 33555682-33556344,33557138-33557299
Length = 274
Score = 62.1 bits (144), Expect = 3e-10
Identities = 35/61 (57%), Positives = 42/61 (68%)
Frame = -3
Query: 522 KCQAKKVRQTSTFGGVITPWLSCLFYQVGRG*WGNKIGKPPKVLCKVTGKCGCVTVRLIP 343
KC AK+V T+ G +I LS + V RG WGNKIG+P V CKVTGKCG VTVR++P
Sbjct: 125 KC-AKEVA-TAIRGAIILAKLSVV--PVRRGYWGNKIGQPHTVPCKVTGKCGSVTVRMVP 180
Query: 342 A 340
A
Sbjct: 181 A 181
Score = 48.4 bits (110), Expect = 4e-06
Identities = 30/70 (42%), Positives = 38/70 (54%)
Frame = -1
Query: 332 GTGIVSAPVPKKLLPDGWCTGLLHLSRG*IGHLGKFC*SPHMLPLPKTYG*LTLDLWRDI 153
G+GIV+A VPKK+L + SRG LG F + L KTYG LT D WRD
Sbjct: 184 GSGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDC-LMKTYGFLTPDFWRDT 242
Query: 152 RLTKSAY*EF 123
+ KS + E+
Sbjct: 243 KFVKSPFQEY 252
>12_01_0342 + 2634678-2635937
Length = 419
Score = 29.9 bits (64), Expect = 1.4
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -3
Query: 261 PEPWLNWPPWEILLKPTYAAIAQ 193
P+PWLNWP + + P++ A+
Sbjct: 395 PQPWLNWPLAPVWITPSFTKTAK 417
>12_01_0334 - 2573375-2574634
Length = 419
Score = 29.9 bits (64), Expect = 1.4
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -3
Query: 261 PEPWLNWPPWEILLKPTYAAIAQ 193
P+PWLNWP + + P++ A+
Sbjct: 395 PQPWLNWPLAPVWITPSFTKTAK 417
>05_03_0218 -
10437377-10437622,10437896-10438141,10438528-10438611,
10438720-10438854
Length = 236
Score = 27.9 bits (59), Expect = 5.7
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -2
Query: 550 INLGFWGLSKVPSQESSPNFHIWRRYYP 467
I+L W +S P S + HI + YYP
Sbjct: 108 IDLRGWSISSTPLSTSRESMHIVQNYYP 135
>06_03_1309 + 29223197-29223240,29223358-29223592,29223695-29223783,
29223870-29223968,29224065-29224158,29224297-29224514,
29224861-29224967,29225298-29225472,29225596-29225743,
29226548-29226596,29228016-29228162,29229990-29229996,
29230417-29230482,29230773-29231991,29232073-29233149,
29233226-29233355,29233519-29233617,29233817-29233878,
29234429-29234533
Length = 1389
Score = 27.5 bits (58), Expect = 7.5
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 418 VTPLTSSN-LVKQAT*PRGNNASKCGSLANFLGLALSTT 531
+TP+ N ++ Q+ P G+ S C S+ NFL + TT
Sbjct: 1299 LTPVARLNGILMQSRKPSGSFGSSCSSINNFLKSSAGTT 1337
>02_04_0120 -
19932330-19932366,19932562-19932781,19932876-19932987,
19933071-19933226,19933307-19933471,19933723-19934160,
19934822-19935009,19935465-19935531,19936160-19936332,
19937176-19937308,19937399-19937546,19937622-19937815,
19938855-19939058,19939760-19939834
Length = 769
Score = 27.5 bits (58), Expect = 7.5
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -3
Query: 294 SSRWLVYRTATPEPWLNW 241
S+RWL+Y P WLN+
Sbjct: 395 STRWLLYTEQAPSAWLNF 412
>12_02_0800 + 23299674-23299678,23299714-23299791,23299876-23299920,
23300052-23300415,23300493-23300574,23300793-23300873,
23300974-23302106,23302202-23302350,23302426-23302516,
23303628-23305940
Length = 1446
Score = 27.1 bits (57), Expect = 10.0
Identities = 20/78 (25%), Positives = 30/78 (38%)
Frame = +2
Query: 170 QELASHMSWAMAAYVGFSKISQGGQFNHGSGVAVLYTNHLEEAS*ELAQTQFQYHQSAGI 349
Q+ SH + G + +GG N G G V +H+ A T +Y
Sbjct: 1334 QQQLSHAPRRQGHHNG-GRYHRGGGTNRGRGYDVGKPSHVTNAERRRGGTHLEYQPVGSY 1392
Query: 350 SRTVTQPHFPVTLQRTLG 403
++T P T +RT G
Sbjct: 1393 NKTADFQQNPGTDERTEG 1410
>10_01_0030 -
386008-388056,388166-388360,388931-389062,389167-389538,
389753-389894,392274-392533,392737-393015,394796-394939
Length = 1190
Score = 27.1 bits (57), Expect = 10.0
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = +3
Query: 390 KEPWVAFRSCYPTNLFQLGK 449
++PW+ +R CYP + F + K
Sbjct: 748 EKPWLQYRRCYPLDSFIVSK 767
>07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871
Length = 233
Score = 27.1 bits (57), Expect = 10.0
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -3
Query: 408 KPPKVLCKVTGKCGCVTVRLI 346
KP V CKV K G VTVR++
Sbjct: 47 KPHTVSCKVADKYGSVTVRMM 67
>06_01_0469 +
3322886-3323564,3324033-3324953,3325025-3325155,
3325237-3325317,3328173-3328820
Length = 819
Score = 27.1 bits (57), Expect = 10.0
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = +1
Query: 355 DCYTTTLSGYLAKNLGWLSDLVTPLTS-SNLVKQAT*PRGNNASKCGSLAN--FLGLALS 525
+ + T L+ Y + WLSDL + + T G N+S+ G ++N F G++
Sbjct: 232 ESWATMLNEYKLQENSWLSDLYRSRNKWCSAFNKDTFDGGINSSQWGEVSNNTFTGISDE 291
Query: 526 TTP 534
+TP
Sbjct: 292 STP 294
>05_03_0428 + 13899295-13899669
Length = 124
Score = 27.1 bits (57), Expect = 10.0
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = -2
Query: 454 PVLPSWKRLVG*QDRKATQGSLQGNRKVWLCNSPADSCRLVVLELCLRQFLR 299
P + ++ L+G AT G G+R+ W C++ + SCR C R R
Sbjct: 62 PTIRTYNSLIG---GSATSG---GSRRHWTCSTSSRSCRSPAPVCCCRHQTR 107
>03_02_0860 - 11864510-11864732,11864867-11865191,11866213-11867779
Length = 704
Score = 27.1 bits (57), Expect = 10.0
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +3
Query: 282 TIWKKLLRNWRRHNSSTTSRQESAGLLHNHTFRLPCKEPW 401
T K +WRRH S T +A +L + F+ +PW
Sbjct: 177 TAVKDAYEDWRRHRSDKTENNRTASVLVDGVFQ---PKPW 213
>01_06_0563 - 30266533-30266846,30266935-30267274
Length = 217
Score = 27.1 bits (57), Expect = 10.0
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = +1
Query: 250 PRLRCSSPVHQPSGRSFLGTGADTIPVPPVGRNQPDCYTTTL 375
P C PV+ P+ L +T VPPVG C T+ L
Sbjct: 163 PTSLCDKPVYPPNKWIGLSLLKETRTVPPVGLQAIYCPTSVL 204
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,570,065
Number of Sequences: 37544
Number of extensions: 379660
Number of successful extensions: 1114
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1079
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1110
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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