Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30712
         (551 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)               60   1e-09
SB_33107| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_54883| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_41759| Best HMM Match : Ion_trans (HMM E-Value=1.1e-08)             28   5.8  
SB_24309| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  

>SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 252

 Score = 60.1 bits (139), Expect = 1e-09
 Identities = 35/61 (57%), Positives = 40/61 (65%)
 Frame = -3

Query: 522 KCQAKKVRQTSTFGGVITPWLSCLFYQVGRG*WGNKIGKPPKVLCKVTGKCGCVTVRLIP 343
           KC +K+V  T+  G +I   LS +   V RG WGNKIGKP  V CKVTGKCG   VRLIP
Sbjct: 90  KC-SKEVA-TAIRGAIILAKLSVI--PVRRGYWGNKIGKPHTVPCKVTGKCGSTRVRLIP 145

Query: 342 A 340
           A
Sbjct: 146 A 146



 Score = 51.6 bits (118), Expect = 4e-07
 Identities = 30/70 (42%), Positives = 37/70 (52%)
 Frame = -1

Query: 332 GTGIVSAPVPKKLLPDGWCTGLLHLSRG*IGHLGKFC*SPHMLPLPKTYG*LTLDLWRDI 153
           GTGIVSAPVPKKLL           +RG    LG F        + +TY  LT D+W++ 
Sbjct: 149 GTGIVSAPVPKKLLQMAGIEDCYTSTRGQTATLGNFA-KATFAAISETYAYLTPDMWKET 207

Query: 152 RLTKSAY*EF 123
             TK+ Y EF
Sbjct: 208 VFTKTPYQEF 217



 Score = 37.9 bits (84), Expect = 0.005
 Identities = 16/29 (55%), Positives = 20/29 (68%)
 Frame = -2

Query: 301 RSFFQMVGVQDCYT*AVVKLATLGNFAKA 215
           +   QM G++DCYT    + ATLGNFAKA
Sbjct: 159 KKLLQMAGIEDCYTSTRGQTATLGNFAKA 187


>SB_33107| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1079

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -2

Query: 271 DCYT*AVVKLATLGNFAKAHICCHC 197
           D YT  +    T G F +AHIC HC
Sbjct: 442 DGYTGTLCSECTKGRFKRAHICRHC 466


>SB_54883| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2070

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -3

Query: 315  CASS*EASSRWLVYRTATPEPWLNWPPW 232
            CA+    S +W+  RTAT  P   W  W
Sbjct: 1367 CANQLNKSMKWITMRTATLPPSTRWAYW 1394


>SB_41759| Best HMM Match : Ion_trans (HMM E-Value=1.1e-08)
          Length = 276

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 477 VITPWLSCLFYQVGRG*WGNKIG 409
           ++  WL+C++Y +GRG   NK G
Sbjct: 187 LVAHWLACIWYFIGRGEIRNKHG 209


>SB_24309| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 303

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 16/29 (55%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
 Frame = -2

Query: 529 LSKVPSQESSPNFH---IWRRYYPLAKLP 452
           LSKVPS E S  F     WR Y  LAK+P
Sbjct: 233 LSKVPSGEHSQTFSKGTKWRTYRRLAKVP 261


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,160,857
Number of Sequences: 59808
Number of extensions: 399307
Number of successful extensions: 932
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1276425465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)