BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30712 (551 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 1e-09 SB_33107| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9 SB_54883| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5 SB_41759| Best HMM Match : Ion_trans (HMM E-Value=1.1e-08) 28 5.8 SB_24309| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8 >SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 252 Score = 60.1 bits (139), Expect = 1e-09 Identities = 35/61 (57%), Positives = 40/61 (65%) Frame = -3 Query: 522 KCQAKKVRQTSTFGGVITPWLSCLFYQVGRG*WGNKIGKPPKVLCKVTGKCGCVTVRLIP 343 KC +K+V T+ G +I LS + V RG WGNKIGKP V CKVTGKCG VRLIP Sbjct: 90 KC-SKEVA-TAIRGAIILAKLSVI--PVRRGYWGNKIGKPHTVPCKVTGKCGSTRVRLIP 145 Query: 342 A 340 A Sbjct: 146 A 146 Score = 51.6 bits (118), Expect = 4e-07 Identities = 30/70 (42%), Positives = 37/70 (52%) Frame = -1 Query: 332 GTGIVSAPVPKKLLPDGWCTGLLHLSRG*IGHLGKFC*SPHMLPLPKTYG*LTLDLWRDI 153 GTGIVSAPVPKKLL +RG LG F + +TY LT D+W++ Sbjct: 149 GTGIVSAPVPKKLLQMAGIEDCYTSTRGQTATLGNFA-KATFAAISETYAYLTPDMWKET 207 Query: 152 RLTKSAY*EF 123 TK+ Y EF Sbjct: 208 VFTKTPYQEF 217 Score = 37.9 bits (84), Expect = 0.005 Identities = 16/29 (55%), Positives = 20/29 (68%) Frame = -2 Query: 301 RSFFQMVGVQDCYT*AVVKLATLGNFAKA 215 + QM G++DCYT + ATLGNFAKA Sbjct: 159 KKLLQMAGIEDCYTSTRGQTATLGNFAKA 187 >SB_33107| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1079 Score = 29.5 bits (63), Expect = 1.9 Identities = 12/25 (48%), Positives = 14/25 (56%) Frame = -2 Query: 271 DCYT*AVVKLATLGNFAKAHICCHC 197 D YT + T G F +AHIC HC Sbjct: 442 DGYTGTLCSECTKGRFKRAHICRHC 466 >SB_54883| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 2070 Score = 29.1 bits (62), Expect = 2.5 Identities = 11/28 (39%), Positives = 14/28 (50%) Frame = -3 Query: 315 CASS*EASSRWLVYRTATPEPWLNWPPW 232 CA+ S +W+ RTAT P W W Sbjct: 1367 CANQLNKSMKWITMRTATLPPSTRWAYW 1394 >SB_41759| Best HMM Match : Ion_trans (HMM E-Value=1.1e-08) Length = 276 Score = 27.9 bits (59), Expect = 5.8 Identities = 10/23 (43%), Positives = 16/23 (69%) Frame = -3 Query: 477 VITPWLSCLFYQVGRG*WGNKIG 409 ++ WL+C++Y +GRG NK G Sbjct: 187 LVAHWLACIWYFIGRGEIRNKHG 209 >SB_24309| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 303 Score = 27.9 bits (59), Expect = 5.8 Identities = 16/29 (55%), Positives = 17/29 (58%), Gaps = 3/29 (10%) Frame = -2 Query: 529 LSKVPSQESSPNFH---IWRRYYPLAKLP 452 LSKVPS E S F WR Y LAK+P Sbjct: 233 LSKVPSGEHSQTFSKGTKWRTYRRLAKVP 261 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 18,160,857 Number of Sequences: 59808 Number of extensions: 399307 Number of successful extensions: 932 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 880 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 930 length of database: 16,821,457 effective HSP length: 78 effective length of database: 12,156,433 effective search space used: 1276425465 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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