Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30712
         (551 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X69120-1|CAA48872.1|  267|Drosophila melanogaster ribosoaml prot...    62   5e-10
U01335-1|AAA87053.1|  267|Drosophila melanogaster ribosomal prot...    62   5e-10
U01334-1|AAC34198.1|  267|Drosophila melanogaster ribosomal prot...    62   5e-10
AY094799-1|AAM11152.1|  267|Drosophila melanogaster LD24077p pro...    62   5e-10
AE014134-1713|AAF52822.1|  267|Drosophila melanogaster CG5920-PA...    62   5e-10
AE014298-1000|AAN09196.1|  319|Drosophila melanogaster CG14425-P...    31   1.4  

>X69120-1|CAA48872.1|  267|Drosophila melanogaster ribosoaml protein
           S2 protein.
          Length = 267

 Score = 62.1 bits (144), Expect = 5e-10
 Identities = 36/61 (59%), Positives = 42/61 (68%)
 Frame = -3

Query: 522 KCQAKKVRQTSTFGGVITPWLSCLFYQVGRG*WGNKIGKPPKVLCKVTGKCGCVTVRLIP 343
           KC +K+V  T+  G +I   LS +   V RG WGNKIGKP  V CKVTGKCG V+VRLIP
Sbjct: 125 KC-SKEVA-TAIRGAIILAKLSVV--PVRRGYWGNKIGKPHTVPCKVTGKCGSVSVRLIP 180

Query: 342 A 340
           A
Sbjct: 181 A 181



 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 29/67 (43%), Positives = 38/67 (56%)
 Frame = -1

Query: 332 GTGIVSAPVPKKLLPDGWCTGLLHLSRG*IGHLGKFC*SPHMLPLPKTYG*LTLDLWRDI 153
           GTGIVSAPVP+KLL           +RG  G LG F  + +   + KTY  LT DLW+++
Sbjct: 184 GTGIVSAPVPRKLLTMAGIEDCYTSARGSTGTLGNFAKATY-AAIAKTYAYLTPDLWKEM 242

Query: 152 RLTKSAY 132
            L  + Y
Sbjct: 243 PLGSTPY 249



 Score = 36.3 bits (80), Expect = 0.028
 Identities = 16/29 (55%), Positives = 18/29 (62%)
 Frame = -2

Query: 301 RSFFQMVGVQDCYT*AVVKLATLGNFAKA 215
           R    M G++DCYT A     TLGNFAKA
Sbjct: 194 RKLLTMAGIEDCYTSARGSTGTLGNFAKA 222


>U01335-1|AAA87053.1|  267|Drosophila melanogaster ribosomal protein
           S2 protein.
          Length = 267

 Score = 62.1 bits (144), Expect = 5e-10
 Identities = 36/61 (59%), Positives = 42/61 (68%)
 Frame = -3

Query: 522 KCQAKKVRQTSTFGGVITPWLSCLFYQVGRG*WGNKIGKPPKVLCKVTGKCGCVTVRLIP 343
           KC +K+V  T+  G +I   LS +   V RG WGNKIGKP  V CKVTGKCG V+VRLIP
Sbjct: 125 KC-SKEVA-TAIRGAIILAKLSVV--PVRRGYWGNKIGKPHTVPCKVTGKCGSVSVRLIP 180

Query: 342 A 340
           A
Sbjct: 181 A 181



 Score = 52.0 bits (119), Expect = 5e-07
 Identities = 30/67 (44%), Positives = 38/67 (56%)
 Frame = -1

Query: 332 GTGIVSAPVPKKLLPDGWCTGLLHLSRG*IGHLGKFC*SPHMLPLPKTYG*LTLDLWRDI 153
           GTGIVSAPVPKKLL           +RG  G LG F  + +   + KTY  LT DLW+++
Sbjct: 184 GTGIVSAPVPKKLLTMAGIEDCYTSARGSTGTLGNFAKATY-AAIAKTYAYLTPDLWKEM 242

Query: 152 RLTKSAY 132
            L  + Y
Sbjct: 243 PLGSTPY 249


>U01334-1|AAC34198.1|  267|Drosophila melanogaster ribosomal protein
           S2 protein.
          Length = 267

 Score = 62.1 bits (144), Expect = 5e-10
 Identities = 36/61 (59%), Positives = 42/61 (68%)
 Frame = -3

Query: 522 KCQAKKVRQTSTFGGVITPWLSCLFYQVGRG*WGNKIGKPPKVLCKVTGKCGCVTVRLIP 343
           KC +K+V  T+  G +I   LS +   V RG WGNKIGKP  V CKVTGKCG V+VRLIP
Sbjct: 125 KC-SKEVA-TAIRGAIILAKLSVV--PVRRGYWGNKIGKPHTVPCKVTGKCGSVSVRLIP 180

Query: 342 A 340
           A
Sbjct: 181 A 181



 Score = 52.0 bits (119), Expect = 5e-07
 Identities = 30/67 (44%), Positives = 38/67 (56%)
 Frame = -1

Query: 332 GTGIVSAPVPKKLLPDGWCTGLLHLSRG*IGHLGKFC*SPHMLPLPKTYG*LTLDLWRDI 153
           GTGIVSAPVPKKLL           +RG  G LG F  + +   + KTY  LT DLW+++
Sbjct: 184 GTGIVSAPVPKKLLTMAGIEDCYTSARGSTGTLGNFAKATY-AAIAKTYAYLTPDLWKEM 242

Query: 152 RLTKSAY 132
            L  + Y
Sbjct: 243 PLGSTPY 249


>AY094799-1|AAM11152.1|  267|Drosophila melanogaster LD24077p
           protein.
          Length = 267

 Score = 62.1 bits (144), Expect = 5e-10
 Identities = 36/61 (59%), Positives = 42/61 (68%)
 Frame = -3

Query: 522 KCQAKKVRQTSTFGGVITPWLSCLFYQVGRG*WGNKIGKPPKVLCKVTGKCGCVTVRLIP 343
           KC +K+V  T+  G +I   LS +   V RG WGNKIGKP  V CKVTGKCG V+VRLIP
Sbjct: 125 KC-SKEVA-TAIRGAIILAKLSVV--PVRRGYWGNKIGKPHTVPCKVTGKCGSVSVRLIP 180

Query: 342 A 340
           A
Sbjct: 181 A 181



 Score = 52.0 bits (119), Expect = 5e-07
 Identities = 30/67 (44%), Positives = 38/67 (56%)
 Frame = -1

Query: 332 GTGIVSAPVPKKLLPDGWCTGLLHLSRG*IGHLGKFC*SPHMLPLPKTYG*LTLDLWRDI 153
           GTGIVSAPVPKKLL           +RG  G LG F  + +   + KTY  LT DLW+++
Sbjct: 184 GTGIVSAPVPKKLLTMAGIEDCYTSARGSTGTLGNFAKATY-AAIAKTYAYLTPDLWKEM 242

Query: 152 RLTKSAY 132
            L  + Y
Sbjct: 243 PLGSTPY 249


>AE014134-1713|AAF52822.1|  267|Drosophila melanogaster CG5920-PA
           protein.
          Length = 267

 Score = 62.1 bits (144), Expect = 5e-10
 Identities = 36/61 (59%), Positives = 42/61 (68%)
 Frame = -3

Query: 522 KCQAKKVRQTSTFGGVITPWLSCLFYQVGRG*WGNKIGKPPKVLCKVTGKCGCVTVRLIP 343
           KC +K+V  T+  G +I   LS +   V RG WGNKIGKP  V CKVTGKCG V+VRLIP
Sbjct: 125 KC-SKEVA-TAIRGAIILAKLSVV--PVRRGYWGNKIGKPHTVPCKVTGKCGSVSVRLIP 180

Query: 342 A 340
           A
Sbjct: 181 A 181



 Score = 52.0 bits (119), Expect = 5e-07
 Identities = 30/67 (44%), Positives = 38/67 (56%)
 Frame = -1

Query: 332 GTGIVSAPVPKKLLPDGWCTGLLHLSRG*IGHLGKFC*SPHMLPLPKTYG*LTLDLWRDI 153
           GTGIVSAPVPKKLL           +RG  G LG F  + +   + KTY  LT DLW+++
Sbjct: 184 GTGIVSAPVPKKLLTMAGIEDCYTSARGSTGTLGNFAKATY-AAIAKTYAYLTPDLWKEM 242

Query: 152 RLTKSAY 132
            L  + Y
Sbjct: 243 PLGSTPY 249


>AE014298-1000|AAN09196.1|  319|Drosophila melanogaster CG14425-PA,
           isoform A protein.
          Length = 319

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 22/59 (37%), Positives = 27/59 (45%)
 Frame = +1

Query: 370 TLSGYLAKNLGWLSDLVTPLTSSNLVKQAT*PRGNNASKCGSLANFLGLALSTTPKSPN 546
           T SG+ A NL   S+    L+ SN     T   GN  S   S +NF   A S+T  S N
Sbjct: 167 TNSGHFASNLAGSSNFTNHLSGSN---NYTNSNGNFTSNAASSSNFSNNAASSTNYSKN 222


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,745,276
Number of Sequences: 53049
Number of extensions: 613475
Number of successful extensions: 1565
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1556
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2110522698
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)