Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30712
(551 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U42436-10|AAF99899.1| 272|Caenorhabditis elegans Ribosomal prot... 55 4e-08
Z81467-3|CAC42255.1| 1143|Caenorhabditis elegans Hypothetical pr... 32 0.32
Z81467-2|CAC42254.1| 1147|Caenorhabditis elegans Hypothetical pr... 32 0.32
AF195611-1|AAF15530.1| 1147|Caenorhabditis elegans LIN-41B protein. 32 0.32
AF195610-1|AAF15529.1| 1143|Caenorhabditis elegans LIN-41A protein. 32 0.32
AC024812-2|AAF59555.1| 304|Caenorhabditis elegans Hypothetical ... 29 2.9
Z82280-6|CAB05267.2| 460|Caenorhabditis elegans Hypothetical pr... 27 6.8
Z70204-3|CAA94113.1| 385|Caenorhabditis elegans Hypothetical pr... 27 9.0
>U42436-10|AAF99899.1| 272|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 2 protein.
Length = 272
Score = 54.8 bits (126), Expect = 4e-08
Identities = 32/61 (52%), Positives = 39/61 (63%)
Frame = -3
Query: 522 KCQAKKVRQTSTFGGVITPWLSCLFYQVGRG*WGNKIGKPPKVLCKVTGKCGCVTVRLIP 343
KC +K+V T+ G ++ L+ + V RG WGNKIG P V CKVTGKC V VRLIP
Sbjct: 138 KC-SKEVA-TAIRGAIVAAKLAVV--PVRRGYWGNKIGLPHTVPCKVTGKCASVMVRLIP 193
Query: 342 A 340
A
Sbjct: 194 A 194
Score = 50.4 bits (115), Expect = 8e-07
Identities = 30/67 (44%), Positives = 37/67 (55%)
Frame = -1
Query: 332 GTGIVSAPVPKKLLPDGWCTGLLHLSRG*IGHLGKFC*SPHMLPLPKTYG*LTLDLWRDI 153
GTGIVSAPVPKKLL ++G LG F + + L +TY LT DLW++
Sbjct: 197 GTGIVSAPVPKKLLHMAGIEDCYTAAKGSTATLGNFAKATY-AALQRTYSYLTPDLWKEE 255
Query: 152 RLTKSAY 132
L KS Y
Sbjct: 256 ALEKSPY 262
Score = 37.5 bits (83), Expect = 0.006
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = -2
Query: 301 RSFFQMVGVQDCYT*AVVKLATLGNFAKA 215
+ M G++DCYT A ATLGNFAKA
Sbjct: 207 KKLLHMAGIEDCYTAAKGSTATLGNFAKA 235
>Z81467-3|CAC42255.1| 1143|Caenorhabditis elegans Hypothetical
protein C12C8.3b protein.
Length = 1143
Score = 31.9 bits (69), Expect = 0.32
Identities = 23/79 (29%), Positives = 39/79 (49%)
Frame = +1
Query: 256 LRCSSPVHQPSGRSFLGTGADTIPVPPVGRNQPDCYTTTLSGYLAKNLGWLSDLVTPLTS 435
+ S+P+HQP SF +G P P +G P ++ G + + +G+ D + LTS
Sbjct: 195 INSSTPLHQPRAFSFSLSGMPGSPSPVMGARMP----SSAGGLMMRPIGF-PDSDSSLTS 249
Query: 436 SNLVKQAT*PRGNNASKCG 492
+ ++Q + NN S G
Sbjct: 250 WSPLQQPSQLSINNLSSIG 268
>Z81467-2|CAC42254.1| 1147|Caenorhabditis elegans Hypothetical
protein C12C8.3a protein.
Length = 1147
Score = 31.9 bits (69), Expect = 0.32
Identities = 23/79 (29%), Positives = 39/79 (49%)
Frame = +1
Query: 256 LRCSSPVHQPSGRSFLGTGADTIPVPPVGRNQPDCYTTTLSGYLAKNLGWLSDLVTPLTS 435
+ S+P+HQP SF +G P P +G P ++ G + + +G+ D + LTS
Sbjct: 195 INSSTPLHQPRAFSFSLSGMPGSPSPVMGARMP----SSAGGLMMRPIGF-PDSDSSLTS 249
Query: 436 SNLVKQAT*PRGNNASKCG 492
+ ++Q + NN S G
Sbjct: 250 WSPLQQPSQLSINNLSSIG 268
>AF195611-1|AAF15530.1| 1147|Caenorhabditis elegans LIN-41B protein.
Length = 1147
Score = 31.9 bits (69), Expect = 0.32
Identities = 23/79 (29%), Positives = 39/79 (49%)
Frame = +1
Query: 256 LRCSSPVHQPSGRSFLGTGADTIPVPPVGRNQPDCYTTTLSGYLAKNLGWLSDLVTPLTS 435
+ S+P+HQP SF +G P P +G P ++ G + + +G+ D + LTS
Sbjct: 195 INSSTPLHQPRAFSFSLSGMPGSPSPVMGARMP----SSAGGLMMRPIGF-PDSDSSLTS 249
Query: 436 SNLVKQAT*PRGNNASKCG 492
+ ++Q + NN S G
Sbjct: 250 WSPLQQPSQLSINNLSSIG 268
>AF195610-1|AAF15529.1| 1143|Caenorhabditis elegans LIN-41A protein.
Length = 1143
Score = 31.9 bits (69), Expect = 0.32
Identities = 23/79 (29%), Positives = 39/79 (49%)
Frame = +1
Query: 256 LRCSSPVHQPSGRSFLGTGADTIPVPPVGRNQPDCYTTTLSGYLAKNLGWLSDLVTPLTS 435
+ S+P+HQP SF +G P P +G P ++ G + + +G+ D + LTS
Sbjct: 195 INSSTPLHQPRAFSFSLSGMPGSPSPVMGARMP----SSAGGLMMRPIGF-PDSDSSLTS 249
Query: 436 SNLVKQAT*PRGNNASKCG 492
+ ++Q + NN S G
Sbjct: 250 WSPLQQPSQLSINNLSSIG 268
>AC024812-2|AAF59555.1| 304|Caenorhabditis elegans Hypothetical
protein Y54E10BR.3 protein.
Length = 304
Score = 28.7 bits (61), Expect = 2.9
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Frame = +3
Query: 330 TTSRQESAGLLH-NHTFRLPCKEPWVAFRSCYP 425
T E G L NH F PC EPW+ ++ P
Sbjct: 244 TFKLDEDVGALDCNHIFHRPCIEPWLKTKNSCP 276
>Z82280-6|CAB05267.2| 460|Caenorhabditis elegans Hypothetical
protein R05A10.6 protein.
Length = 460
Score = 27.5 bits (58), Expect = 6.8
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +3
Query: 384 PCKEPWVAF 410
PCKEPWVAF
Sbjct: 452 PCKEPWVAF 460
>Z70204-3|CAA94113.1| 385|Caenorhabditis elegans Hypothetical
protein C11G6.3 protein.
Length = 385
Score = 27.1 bits (57), Expect = 9.0
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = -3
Query: 339 DWWYWNCVCASS*EASSRWLVYR 271
DW++W+CV ++ S+W R
Sbjct: 331 DWFHWHCVGLTAEPTDSKWFCTR 353
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,286,138
Number of Sequences: 27780
Number of extensions: 293502
Number of successful extensions: 785
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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