Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30712
(551 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) 62 2e-10
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila... 62 2e-10
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi... 62 2e-10
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 62 2e-10
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 62 2e-10
At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri... 62 2e-10
At4g11000.1 68417.m01789 ankyrin repeat family protein contains ... 30 1.2
At1g16780.1 68414.m02016 vacuolar-type H+-translocating inorgani... 29 2.1
At5g55820.1 68418.m06956 expressed protein 28 4.8
At1g78920.1 68414.m09201 vacuolar-type H+-translocating inorgani... 27 6.3
At2g23770.1 68415.m02839 protein kinase family protein / peptido... 27 8.3
>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
Length = 285
Score = 62.5 bits (145), Expect = 2e-10
Identities = 35/61 (57%), Positives = 42/61 (68%)
Frame = -3
Query: 522 KCQAKKVRQTSTFGGVITPWLSCLFYQVGRG*WGNKIGKPPKVLCKVTGKCGCVTVRLIP 343
KC +K+V T+ G +I LS + V RG WGNKIGKP V CKVTGKCG VTVR++P
Sbjct: 136 KC-SKEVA-TAIRGAIILAKLSVV--PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVP 191
Query: 342 A 340
A
Sbjct: 192 A 192
Score = 45.2 bits (102), Expect = 3e-05
Identities = 28/69 (40%), Positives = 38/69 (55%)
Frame = -1
Query: 332 GTGIVSAPVPKKLLPDGWCTGLLHLSRG*IGHLGKFC*SPHMLPLPKTYG*LTLDLWRDI 153
G+GIV+A VPKK+L + SRG LG F + L KTYG LT + W++
Sbjct: 195 GSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDC-LQKTYGFLTPEFWKET 253
Query: 152 RLTKSAY*E 126
R ++S Y E
Sbjct: 254 RFSRSPYQE 262
>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
to ribosomal protein S2 GI:430711 from [Drosophila
melanogaster]
Length = 284
Score = 62.5 bits (145), Expect = 2e-10
Identities = 35/61 (57%), Positives = 42/61 (68%)
Frame = -3
Query: 522 KCQAKKVRQTSTFGGVITPWLSCLFYQVGRG*WGNKIGKPPKVLCKVTGKCGCVTVRLIP 343
KC +K+V T+ G +I LS + V RG WGNKIGKP V CKVTGKCG VTVR++P
Sbjct: 135 KC-SKEVA-TAIRGAIILAKLSVV--PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVP 190
Query: 342 A 340
A
Sbjct: 191 A 191
Score = 45.2 bits (102), Expect = 3e-05
Identities = 28/69 (40%), Positives = 38/69 (55%)
Frame = -1
Query: 332 GTGIVSAPVPKKLLPDGWCTGLLHLSRG*IGHLGKFC*SPHMLPLPKTYG*LTLDLWRDI 153
G+GIV+A VPKK+L + SRG LG F + L KTYG LT + W++
Sbjct: 194 GSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDC-LQKTYGFLTPEFWKET 252
Query: 152 RLTKSAY*E 126
R ++S Y E
Sbjct: 253 RFSRSPYQE 261
>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
to ribosomal protein S2 GI:939717 from [Urechis caupo]
Length = 284
Score = 62.5 bits (145), Expect = 2e-10
Identities = 35/61 (57%), Positives = 42/61 (68%)
Frame = -3
Query: 522 KCQAKKVRQTSTFGGVITPWLSCLFYQVGRG*WGNKIGKPPKVLCKVTGKCGCVTVRLIP 343
KC +K+V T+ G +I LS + V RG WGNKIGKP V CKVTGKCG VTVR++P
Sbjct: 135 KC-SKEVA-TAIRGAIILAKLSVV--PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVP 190
Query: 342 A 340
A
Sbjct: 191 A 191
Score = 45.2 bits (102), Expect = 3e-05
Identities = 28/69 (40%), Positives = 38/69 (55%)
Frame = -1
Query: 332 GTGIVSAPVPKKLLPDGWCTGLLHLSRG*IGHLGKFC*SPHMLPLPKTYG*LTLDLWRDI 153
G+GIV+A VPKK+L + SRG LG F + L KTYG LT + W++
Sbjct: 194 GSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDC-LQKTYGFLTPEFWKET 252
Query: 152 RLTKSAY*E 126
R ++S Y E
Sbjct: 253 RFSRSPYQE 261
>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative
Length = 284
Score = 62.5 bits (145), Expect = 2e-10
Identities = 35/61 (57%), Positives = 42/61 (68%)
Frame = -3
Query: 522 KCQAKKVRQTSTFGGVITPWLSCLFYQVGRG*WGNKIGKPPKVLCKVTGKCGCVTVRLIP 343
KC +K+V T+ G +I LS + V RG WGNKIGKP V CKVTGKCG VTVR++P
Sbjct: 135 KC-SKEVA-TAIRGAIILAKLSVV--PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVP 190
Query: 342 A 340
A
Sbjct: 191 A 191
Score = 45.2 bits (102), Expect = 3e-05
Identities = 28/69 (40%), Positives = 38/69 (55%)
Frame = -1
Query: 332 GTGIVSAPVPKKLLPDGWCTGLLHLSRG*IGHLGKFC*SPHMLPLPKTYG*LTLDLWRDI 153
G+GIV+A VPKK+L + SRG LG F + L KTYG LT + W++
Sbjct: 194 GSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDC-LQKTYGFLTPEFWKET 252
Query: 152 RLTKSAY*E 126
R ++S Y E
Sbjct: 253 RFSRSPYQE 261
>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
to ribosomal protein S2 GI:939717 from (Urechis caupo)
Length = 284
Score = 62.5 bits (145), Expect = 2e-10
Identities = 35/61 (57%), Positives = 42/61 (68%)
Frame = -3
Query: 522 KCQAKKVRQTSTFGGVITPWLSCLFYQVGRG*WGNKIGKPPKVLCKVTGKCGCVTVRLIP 343
KC +K+V T+ G +I LS + V RG WGNKIGKP V CKVTGKCG VTVR++P
Sbjct: 135 KC-SKEVA-TAIRGAIILAKLSVV--PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVP 190
Query: 342 A 340
A
Sbjct: 191 A 191
Score = 45.2 bits (102), Expect = 3e-05
Identities = 28/69 (40%), Positives = 38/69 (55%)
Frame = -1
Query: 332 GTGIVSAPVPKKLLPDGWCTGLLHLSRG*IGHLGKFC*SPHMLPLPKTYG*LTLDLWRDI 153
G+GIV+A VPKK+L + SRG LG F + L KTYG LT + W++
Sbjct: 194 GSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDC-LQKTYGFLTPEFWKET 252
Query: 152 RLTKSAY*E 126
R ++S Y E
Sbjct: 253 RFSRSPYQE 261
>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
ribosomal protein S2 - Arabidopsis thaliana,
SWISSPROT:RS2_ARATH
Length = 276
Score = 62.1 bits (144), Expect = 2e-10
Identities = 34/61 (55%), Positives = 42/61 (68%)
Frame = -3
Query: 522 KCQAKKVRQTSTFGGVITPWLSCLFYQVGRG*WGNKIGKPPKVLCKVTGKCGCVTVRLIP 343
KC +K+V T+ G +I LS + + RG WGNKIGKP V CKVTGKCG VTVR++P
Sbjct: 127 KC-SKEVA-TAIRGAIILAKLSVV--PIRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVP 182
Query: 342 A 340
A
Sbjct: 183 A 183
Score = 46.4 bits (105), Expect = 1e-05
Identities = 29/69 (42%), Positives = 38/69 (55%)
Frame = -1
Query: 332 GTGIVSAPVPKKLLPDGWCTGLLHLSRG*IGHLGKFC*SPHMLPLPKTYG*LTLDLWRDI 153
G+GIV+A VPKK+L + SRG LG F + L KTYG LT + W++
Sbjct: 186 GSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDC-LQKTYGFLTPEFWKET 244
Query: 152 RLTKSAY*E 126
R +KS Y E
Sbjct: 245 RFSKSPYQE 253
>At4g11000.1 68417.m01789 ankyrin repeat family protein contains
ankyrin repeats, Pfam:PF00023
Length = 406
Score = 29.9 bits (64), Expect = 1.2
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +1
Query: 343 RNQPDC-YTTTLSGYLAKNLGWLSDLVTPLTSSNLVKQAT*PRGNNAS 483
+ +P C TTTL+GYL++NL ++ + L SNL T R NAS
Sbjct: 203 KERPFCGSTTTLAGYLSRNLSFIEKRNSLLGLSNL--SMTKDRSINAS 248
>At1g16780.1 68414.m02016 vacuolar-type H+-translocating inorganic
pyrophosphatase, putative similar to vacuolar-type
H+-translocating inorganic pyrophosphatase GI:6901676
from [Arabidopsis thaliana]
Length = 802
Score = 29.1 bits (62), Expect = 2.1
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -3
Query: 297 ASSRWLVYRTATPEPWLNW 241
AS+RWL+Y P WLN+
Sbjct: 406 ASTRWLLYTEQAPSAWLNF 424
>At5g55820.1 68418.m06956 expressed protein
Length = 1826
Score = 27.9 bits (59), Expect = 4.8
Identities = 18/57 (31%), Positives = 25/57 (43%)
Frame = +1
Query: 262 CSSPVHQPSGRSFLGTGADTIPVPPVGRNQPDCYTTTLSGYLAKNLGWLSDLVTPLT 432
CSSP H + R A T P G P C +TT + +LG+ + + P T
Sbjct: 214 CSSPEHSKNQRVETNLDA-TSPGCSQGEKVPKCVSTTGCKRKSSSLGYCQEEIEPDT 269
>At1g78920.1 68414.m09201 vacuolar-type H+-translocating inorganic
pyrophosphatase (AVPL1) identical to vacuolar-type
H+-translocating inorganic pyrophosphatase GI:6901676
from [Arabidopsis thaliana]
Length = 802
Score = 27.5 bits (58), Expect = 6.3
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -3
Query: 297 ASSRWLVYRTATPEPWLNW 241
AS+RWL+Y P W N+
Sbjct: 406 ASTRWLLYTEQAPSAWFNF 424
>At2g23770.1 68415.m02839 protein kinase family protein /
peptidoglycan-binding LysM domain-containing protein
contains Pfam domains, PF00069: Protein kinase domain
and PF01476: LysM domain
Length = 612
Score = 27.1 bits (57), Expect = 8.3
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +2
Query: 77 INSFIQLLYNDCLKL*TLSMQT*SAGCPSTSQELASHMSWAMAAY 211
+ SF++ L DCLK L+ + S S+ LA+ +W ++Y
Sbjct: 568 LTSFVERLVVDCLKKDHLNRPSMDENVMSLSKILAATQNWEESSY 612
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,913,498
Number of Sequences: 28952
Number of extensions: 289681
Number of successful extensions: 766
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1043173136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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