Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30711
         (510 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              27   0.15 
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    24   0.79 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   4.2  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   5.6  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   9.8  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 26.6 bits (56), Expect = 0.15
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +2

Query: 80  SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 190
           +DT+   K KI  K  I PD + L+   KQ E G TL
Sbjct: 732 TDTVLAYKPKILGKPTISPDSRHLVTLDKQ-ETGVTL 767


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 24.2 bits (50), Expect = 0.79
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +1

Query: 76  SFRHYRKCQS*NPRQGRYSSRPTTSHLCRETIRRWPHS 189
           S +H  KC +       +SS P  +H CR     W HS
Sbjct: 162 SVKHVAKCAT------DFSSWPYDTHRCRINFGSWVHS 193


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +1

Query: 214 IHTSPGFET*RRYNEPSLR 270
           IH  P     RRYN PS R
Sbjct: 346 IHVLPRLLVMRRYNTPSKR 364


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 5/8 (62%), Positives = 8/8 (100%)
 Frame = -3

Query: 280 WRECEGKV 257
           W++CEGK+
Sbjct: 200 WKQCEGKI 207


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 82  GSFHLQCNGLPRKGFDEY 29
           G+  +Q    P KGF+EY
Sbjct: 394 GTLSVQPQANPVKGFEEY 411


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,165
Number of Sequences: 438
Number of extensions: 3190
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14109465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)