Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30709
         (469 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||...   123   2e-29
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s...    69   3e-13
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce...    67   1e-12
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb...    61   9e-11
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    41   1e-04
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe...    35   0.005
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc...    28   0.82 
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc...    26   2.5  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    25   4.4  
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po...    25   5.8  
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    25   5.8  
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy...    25   7.6  
SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter |Schizosacch...    25   7.6  
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa...    25   7.6  
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    25   7.6  

>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 375

 Score =  123 bits (296), Expect = 2e-29
 Identities = 54/71 (76%), Positives = 59/71 (83%)
 Frame = +3

Query: 255 SKRGILTLKYPIEHGIVTNWDHMGKIWHHTFYNELRVAPEGHPVLLTGAPLKPRANRWKM 434
           SKRGILTLKYPIEHGIV NWD M KIWHHTFYNELRVAPE HP LLT APL P++NR KM
Sbjct: 60  SKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKM 119

Query: 435 AQVMCGTFDTP 467
            Q++  TF+ P
Sbjct: 120 TQIIFETFNAP 130



 Score = 68.1 bits (159), Expect = 6e-13
 Identities = 29/33 (87%), Positives = 32/33 (96%)
 Frame = +1

Query: 163 AVFPSIVGRPRHQGVMVGMGQKDSYVGDQAQAK 261
           AVFPSIVGRPRH G+MVGMGQKDSYVGD+AQ+K
Sbjct: 29  AVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61



 Score = 56.8 bits (131), Expect = 2e-09
 Identities = 24/31 (77%), Positives = 27/31 (87%)
 Frame = +2

Query: 83  DEGVAALVVDNGSGMCKAGFAGDDAPRPCSP 175
           +E +AALV+DNGSGMCKAGFAGDDAPR   P
Sbjct: 2   EEEIAALVIDNGSGMCKAGFAGDDAPRAVFP 32


>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
           subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 69.3 bits (162), Expect = 3e-13
 Identities = 26/62 (41%), Positives = 44/62 (70%)
 Frame = +3

Query: 261 RGILTLKYPIEHGIVTNWDHMGKIWHHTFYNELRVAPEGHPVLLTGAPLKPRANRWKMAQ 440
           R +L +KYP+E+GI+ +++ M ++W +TF+ +L++ P G  +LLT  P+ P ANR KM +
Sbjct: 62  RSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCE 121

Query: 441 VM 446
            M
Sbjct: 122 TM 123



 Score = 33.1 bits (72), Expect = 0.022
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +2

Query: 95  AALVVDNGSGMCKAGFAGDDAPRPCSPRSWEGPAIRA 205
           A +V+DNG+G  K G+A D+ PR   P     P +RA
Sbjct: 4   APIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRA 40


>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 66.9 bits (156), Expect = 1e-12
 Identities = 28/63 (44%), Positives = 37/63 (58%)
 Frame = +3

Query: 273 TLKYPIEHGIVTNWDHMGKIWHHTFYNELRVAPEGHPVLLTGAPLKPRANRWKMAQVMCG 452
           +L YPI HG + NWDHM + W  + +  LR  PE H  LLT  PL P  NR   A++M  
Sbjct: 89  SLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFE 148

Query: 453 TFD 461
           +F+
Sbjct: 149 SFN 151



 Score = 32.3 bits (70), Expect = 0.038
 Identities = 11/20 (55%), Positives = 17/20 (85%)
 Frame = +2

Query: 101 LVVDNGSGMCKAGFAGDDAP 160
           +++DNG+G  K G+AG+DAP
Sbjct: 8   IIMDNGTGYSKLGYAGNDAP 27


>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 60.9 bits (141), Expect = 9e-11
 Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
 Frame = +3

Query: 261 RGILTLKYPIEHGIVTNWDHMGKIWHHTFYN-ELRVAPEGHPVLLTGAPLKPRANRWKMA 437
           RG+L ++ PIE GI+ NW  M +IW + + + +L   PE HP+LLT  PL    N+ K+A
Sbjct: 66  RGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIA 125

Query: 438 QVMCGTFDTP 467
           +    T + P
Sbjct: 126 EYFYETLNVP 135



 Score = 37.5 bits (83), Expect = 0.001
 Identities = 15/25 (60%), Positives = 18/25 (72%)
 Frame = +2

Query: 101 LVVDNGSGMCKAGFAGDDAPRPCSP 175
           + +DNGSG  KAGFAGDD P+   P
Sbjct: 12  ICIDNGSGFIKAGFAGDDIPKCLFP 36



 Score = 35.1 bits (77), Expect = 0.005
 Identities = 15/30 (50%), Positives = 21/30 (70%)
 Frame = +1

Query: 166 VFPSIVGRPRHQGVMVGMGQKDSYVGDQAQ 255
           +FP+ VGR +H+ VM    QKD +VG +AQ
Sbjct: 34  LFPTCVGRIKHERVMPSSIQKDMFVGSEAQ 63


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 40.7 bits (91), Expect = 1e-04
 Identities = 20/66 (30%), Positives = 31/66 (46%)
 Frame = +3

Query: 270 LTLKYPIEHGIVTNWDHMGKIWHHTFYNELRVAPEGHPVLLTGAPLKPRANRWKMAQVMC 449
           + +K  I +G V NWD    +W +    +L+  P  HP+L+T     P  NR K  + M 
Sbjct: 63  MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMF 122

Query: 450 GTFDTP 467
            +   P
Sbjct: 123 ESLRCP 128



 Score = 30.3 bits (65), Expect = 0.15
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +2

Query: 92  VAALVVDNGSGMCKAGFAGDDAPRPCSP 175
           V+A+V+D GS   + GF+G+D P+   P
Sbjct: 11  VSAIVIDPGSKWTRIGFSGEDIPKCVLP 38


>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 721

 Score = 35.1 bits (77), Expect = 0.005
 Identities = 16/61 (26%), Positives = 31/61 (50%)
 Frame = +3

Query: 285 PIEHGIVTNWDHMGKIWHHTFYNELRVAPEGHPVLLTGAPLKPRANRWKMAQVMCGTFDT 464
           P E  +++NWD M ++  +TF  +L +    HP+ +T     P   R  M +++   ++ 
Sbjct: 86  PFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFELYNA 144

Query: 465 P 467
           P
Sbjct: 145 P 145



 Score = 27.1 bits (57), Expect = 1.4
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 101 LVVDNGSGMCKAGFAGDDAPR 163
           LV+DNGS   +AG+ G+  P+
Sbjct: 27  LVIDNGSWQLRAGWGGEKDPK 47


>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
           Arp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 27.9 bits (59), Expect = 0.82
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +2

Query: 86  EGVAALVVDNGSGMCKAGFAGDDAPRPCSP 175
           E + +LV+D GS   + G+AG+++P    P
Sbjct: 8   EEIPSLVIDPGSCWTRFGYAGEESPMTILP 37



 Score = 25.8 bits (54), Expect = 3.3
 Identities = 10/49 (20%), Positives = 25/49 (51%)
 Frame = +3

Query: 294 HGIVTNWDHMGKIWHHTFYNELRVAPEGHPVLLTGAPLKPRANRWKMAQ 440
           +GI+ +W+     W      +L+V P  + +++T     P++ R ++ +
Sbjct: 74  NGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIME 122


>SPAC328.05 |||RNA-binding protein involved in export of
           mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -1

Query: 298 PCSMGYLRVRIPLLLVPDLLHKSPSVPYRP 209
           P  + Y     PL  VP +L   PSV Y P
Sbjct: 349 PLQLSYAHYATPLPAVPTVLSGLPSVAYTP 378


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1272

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 300 IVTNWDHMGKIWHHTFYN 353
           ++ + DH+GKI  H FYN
Sbjct: 200 VLLSTDHLGKIAVHEFYN 217


>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 401

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +2

Query: 101 LVVDNGSGMCKAGFAGDDAPR--PCSPRSWEG 190
           +V+DNG+   KAGFAG        C  RS +G
Sbjct: 8   IVLDNGAYHIKAGFAGGKVVEIPNCLTRSKDG 39


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -1

Query: 253 VPDLLHKSPSVPYRP*RPDGGAFPRSRGTR 164
           +  L+ K+PS PY   RP   A   S  TR
Sbjct: 306 IDQLISKAPSYPYSSSRPSASASLASSPTR 335


>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 922

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 288 IEHGIVTNWDHMGKIW 335
           I+H + T+ DH G+IW
Sbjct: 204 IQHCVETHVDHQGEIW 219


>SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 468

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
 Frame = +3

Query: 309 NWDHMG-KIWHHTFYNELRVAPEGHPVLLTGAPLKPRANRWKMA 437
           NW   G  +W    ++ L +     PV+ +  PL P    WK A
Sbjct: 319 NWSVEGLPVWRLIVFSILTLVCRRLPVVFSVKPLVPDIKTWKEA 362


>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
           Arp9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 523

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +3

Query: 285 PIEHGIVTNWDHMGKIWHHTF 347
           PI+ G V +W+ +   W H +
Sbjct: 113 PIQRGRVVDWEALKAFWKHLY 133


>SPAC23C4.19 |spt5||transcription elongation factor
            Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 365  RPRGAPSPAHWGSPQAQGQQMEDG 436
            +P  AP+P  W +P   G   E+G
Sbjct: 957  KPYTAPTPGAWAAPTPGGWDDEEG 980


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,161,760
Number of Sequences: 5004
Number of extensions: 48731
Number of successful extensions: 146
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)