Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30709
(469 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 130 6e-31
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 130 6e-31
SB_56| Best HMM Match : Actin (HMM E-Value=0) 130 6e-31
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 130 6e-31
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 130 6e-31
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 71 6e-13
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 62 2e-10
SB_54| Best HMM Match : Actin (HMM E-Value=0) 55 3e-08
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 43 1e-04
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 42 3e-04
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 38 0.005
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 37 0.007
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 37 0.010
SB_45601| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.36
SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.36
SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8) 31 0.36
SB_37048| Best HMM Match : Phage_tube (HMM E-Value=7.3) 31 0.63
SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.63
SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.83
SB_25587| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.83
SB_15696| Best HMM Match : DUF282 (HMM E-Value=2.5) 30 1.1
SB_13555| Best HMM Match : B5 (HMM E-Value=1.4) 29 1.5
SB_51157| Best HMM Match : Pkinase (HMM E-Value=0.00029) 29 1.9
SB_37572| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_40639| Best HMM Match : CAP_GLY (HMM E-Value=0) 29 2.5
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 29 2.5
SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.4
SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.4
SB_33208| Best HMM Match : Pepsin-I3 (HMM E-Value=4.7) 28 4.4
SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.4
SB_10751| Best HMM Match : TNFR_c6 (HMM E-Value=7.6e-17) 27 5.9
SB_31268| Best HMM Match : zf-C2H2 (HMM E-Value=5.04467e-44) 27 7.7
SB_7266| Best HMM Match : UPAR_LY6 (HMM E-Value=0.015) 27 7.7
SB_52978| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.7
SB_8564| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.7
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 130 bits (314), Expect = 6e-31
Identities = 58/71 (81%), Positives = 62/71 (87%)
Frame = +3
Query: 255 SKRGILTLKYPIEHGIVTNWDHMGKIWHHTFYNELRVAPEGHPVLLTGAPLKPRANRWKM 434
SKRGILTLKYPIEHGIVTNWD M KIWHHTFYNELRVAPE HPVLLT APL P+ANR KM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 435 AQVMCGTFDTP 467
Q+M TF++P
Sbjct: 121 TQIMFETFNSP 131
Score = 70.5 bits (165), Expect = 6e-13
Identities = 31/33 (93%), Positives = 33/33 (100%)
Frame = +1
Query: 163 AVFPSIVGRPRHQGVMVGMGQKDSYVGDQAQAK 261
AVFPSIVGRPRHQGVMVGMGQKDSYVGD+AQ+K
Sbjct: 30 AVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 62
Score = 58.0 bits (134), Expect = 4e-09
Identities = 26/33 (78%), Positives = 28/33 (84%)
Frame = +2
Query: 77 MCDEGVAALVVDNGSGMCKAGFAGDDAPRPCSP 175
M D+ +AALVVDNGSGMCKAGFAGDDAPR P
Sbjct: 1 MEDDEIAALVVDNGSGMCKAGFAGDDAPRAVFP 33
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 130 bits (314), Expect = 6e-31
Identities = 58/71 (81%), Positives = 62/71 (87%)
Frame = +3
Query: 255 SKRGILTLKYPIEHGIVTNWDHMGKIWHHTFYNELRVAPEGHPVLLTGAPLKPRANRWKM 434
SKRGILTLKYPIEHGIVTNWD M KIWHHTFYNELRVAPE HPVLLT APL P+ANR KM
Sbjct: 60 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 119
Query: 435 AQVMCGTFDTP 467
Q+M TF++P
Sbjct: 120 TQIMFETFNSP 130
Score = 70.5 bits (165), Expect = 6e-13
Identities = 31/33 (93%), Positives = 33/33 (100%)
Frame = +1
Query: 163 AVFPSIVGRPRHQGVMVGMGQKDSYVGDQAQAK 261
AVFPSIVGRPRHQGVMVGMGQKDSYVGD+AQ+K
Sbjct: 29 AVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Score = 56.8 bits (131), Expect = 8e-09
Identities = 25/31 (80%), Positives = 27/31 (87%)
Frame = +2
Query: 83 DEGVAALVVDNGSGMCKAGFAGDDAPRPCSP 175
++ VAALVVDNGSGMCKAGFAGDDAPR P
Sbjct: 2 EDDVAALVVDNGSGMCKAGFAGDDAPRAVFP 32
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 130 bits (314), Expect = 6e-31
Identities = 58/71 (81%), Positives = 62/71 (87%)
Frame = +3
Query: 255 SKRGILTLKYPIEHGIVTNWDHMGKIWHHTFYNELRVAPEGHPVLLTGAPLKPRANRWKM 434
SKRGILTLKYPIEHGIVTNWD M KIWHHTFYNELRVAPE HPVLLT APL P+ANR KM
Sbjct: 60 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 119
Query: 435 AQVMCGTFDTP 467
Q+M TF++P
Sbjct: 120 TQIMFETFNSP 130
Score = 70.5 bits (165), Expect = 6e-13
Identities = 31/33 (93%), Positives = 33/33 (100%)
Frame = +1
Query: 163 AVFPSIVGRPRHQGVMVGMGQKDSYVGDQAQAK 261
AVFPSIVGRPRHQGVMVGMGQKDSYVGD+AQ+K
Sbjct: 29 AVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Score = 56.4 bits (130), Expect = 1e-08
Identities = 25/31 (80%), Positives = 27/31 (87%)
Frame = +2
Query: 83 DEGVAALVVDNGSGMCKAGFAGDDAPRPCSP 175
++ VAALVVDNGSGMCKAGFAGDDAPR P
Sbjct: 2 EDEVAALVVDNGSGMCKAGFAGDDAPRAVFP 32
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 130 bits (314), Expect = 6e-31
Identities = 58/71 (81%), Positives = 62/71 (87%)
Frame = +3
Query: 255 SKRGILTLKYPIEHGIVTNWDHMGKIWHHTFYNELRVAPEGHPVLLTGAPLKPRANRWKM 434
SKRGILTLKYPIEHGIVTNWD M KIWHHTFYNELRVAPE HPVLLT APL P+ANR KM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 435 AQVMCGTFDTP 467
Q+M TF++P
Sbjct: 121 TQIMFETFNSP 131
Score = 70.5 bits (165), Expect = 6e-13
Identities = 31/33 (93%), Positives = 33/33 (100%)
Frame = +1
Query: 163 AVFPSIVGRPRHQGVMVGMGQKDSYVGDQAQAK 261
AVFPSIVGRPRHQGVMVGMGQKDSYVGD+AQ+K
Sbjct: 30 AVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 62
Score = 64.1 bits (149), Expect = 6e-11
Identities = 28/33 (84%), Positives = 29/33 (87%)
Frame = +2
Query: 77 MCDEGVAALVVDNGSGMCKAGFAGDDAPRPCSP 175
MCD+ VAALVVDNGSGMCKAGFAGDDAPR P
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFP 33
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 130 bits (314), Expect = 6e-31
Identities = 58/71 (81%), Positives = 62/71 (87%)
Frame = +3
Query: 255 SKRGILTLKYPIEHGIVTNWDHMGKIWHHTFYNELRVAPEGHPVLLTGAPLKPRANRWKM 434
SKRGILTLKYPIEHGIVTNWD M KIWHHTFYNELRVAPE HPVLLT APL P+ANR KM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 435 AQVMCGTFDTP 467
Q+M TF++P
Sbjct: 121 TQIMFETFNSP 131
Score = 70.5 bits (165), Expect = 6e-13
Identities = 31/33 (93%), Positives = 33/33 (100%)
Frame = +1
Query: 163 AVFPSIVGRPRHQGVMVGMGQKDSYVGDQAQAK 261
AVFPSIVGRPRHQGVMVGMGQKDSYVGD+AQ+K
Sbjct: 30 AVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 62
Score = 59.7 bits (138), Expect = 1e-09
Identities = 25/33 (75%), Positives = 28/33 (84%)
Frame = +2
Query: 77 MCDEGVAALVVDNGSGMCKAGFAGDDAPRPCSP 175
M D+ +AALV+DNGSGMCKAGFAGDDAPR P
Sbjct: 1 MADDDIAALVIDNGSGMCKAGFAGDDAPRAVFP 33
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 70.5 bits (165), Expect = 6e-13
Identities = 31/33 (93%), Positives = 33/33 (100%)
Frame = +1
Query: 163 AVFPSIVGRPRHQGVMVGMGQKDSYVGDQAQAK 261
AVFPSIVGRPRHQGVMVGMGQKDSYVGD+AQ+K
Sbjct: 29 AVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Score = 58.4 bits (135), Expect = 3e-09
Identities = 26/31 (83%), Positives = 26/31 (83%)
Frame = +3
Query: 255 SKRGILTLKYPIEHGIVTNWDHMGKIWHHTF 347
SKRGILTLKYPIEHGIVTNWD M KI TF
Sbjct: 60 SKRGILTLKYPIEHGIVTNWDDMEKIMFETF 90
Score = 58.0 bits (134), Expect = 4e-09
Identities = 25/31 (80%), Positives = 27/31 (87%)
Frame = +2
Query: 83 DEGVAALVVDNGSGMCKAGFAGDDAPRPCSP 175
D+ VAALV+DNGSGMCKAGFAGDDAPR P
Sbjct: 2 DDDVAALVIDNGSGMCKAGFAGDDAPRAVFP 32
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 62.1 bits (144), Expect = 2e-10
Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Frame = +3
Query: 198 SGRHGRYGTEGLLCRRSGTSKRGILTLKYPIEHGIVTNWDHMGKIWHHTF-YNELRVAPE 374
S + G + L+ + R +L + YP+++GIV NWD M +W +TF +++ + P
Sbjct: 44 SQKVGDIEVKDLMVGDEASQLRYMLEVNYPMDNGIVRNWDDMKHVWDYTFGESKMNIDPR 103
Query: 375 GHPVLLTGAPLKPRANRWKMAQVM 446
VLLT PL P NR KM +VM
Sbjct: 104 NTKVLLTEPPLNPMKNREKMIEVM 127
Score = 36.7 bits (81), Expect = 0.010
Identities = 18/45 (40%), Positives = 24/45 (53%)
Frame = +2
Query: 89 GVAALVVDNGSGMCKAGFAGDDAPRPCSPRSWEGPAIRASWSVWD 223
G + +V DNG+G K G+AG + P P P IR+S V D
Sbjct: 5 GNSVIVCDNGTGFVKCGYAGSNFPAHIFPSMVGRPIIRSSQKVGD 49
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 54.8 bits (126), Expect = 3e-08
Identities = 35/85 (41%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Frame = +3
Query: 219 GTEGLLCRRSGTSKRGILTLKYP--IEHGIVTNWDHMGKIWHHTFYNELRVAPEGHPVLL 392
GT ++ SG K G+ T + P + IV H K+W H F ++LRV E PVLL
Sbjct: 2094 GTVVVIDNGSGFCKAGLSTDESPRVVFPAIVGRPRH--KMWEHAF-DQLRVRGEDFPVLL 2150
Query: 393 TGAPLKPRANRWKMAQVMCGTFDTP 467
T APL P+ NR +M Q+M +F+ P
Sbjct: 2151 TEAPLNPKMNRERMVQLMFESFNVP 2175
Score = 38.3 bits (85), Expect = 0.003
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = +2
Query: 89 GVAALVVDNGSGMCKAGFAGDDAPRPCSP 175
G +V+DNGSG CKAG + D++PR P
Sbjct: 2093 GGTVVVIDNGSGFCKAGLSTDESPRVVFP 2121
Score = 27.5 bits (58), Expect = 5.9
Identities = 10/12 (83%), Positives = 12/12 (100%)
Frame = +1
Query: 166 VFPSIVGRPRHQ 201
VFP+IVGRPRH+
Sbjct: 2119 VFPAIVGRPRHK 2130
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 43.2 bits (97), Expect = 1e-04
Identities = 22/55 (40%), Positives = 26/55 (47%)
Frame = +3
Query: 279 KYPIEHGIVTNWDHMGKIWHHTFYNELRVAPEGHPVLLTGAPLKPRANRWKMAQV 443
K+PI H IV +WD M + W + LR PE H LL L A W QV
Sbjct: 299 KWPIRHAIVEDWDLMERFWEQCIFKYLRAEPEDHYFLLAVLAL---AASWTSRQV 350
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 41.5 bits (93), Expect = 3e-04
Identities = 19/30 (63%), Positives = 21/30 (70%)
Frame = +3
Query: 378 HPVLLTGAPLKPRANRWKMAQVMCGTFDTP 467
HPVLLT APL PR NR K A+V TF+ P
Sbjct: 127 HPVLLTEAPLNPRRNREKAAEVFFETFNVP 156
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 37.5 bits (83), Expect = 0.005
Identities = 16/61 (26%), Positives = 32/61 (52%)
Frame = +3
Query: 285 PIEHGIVTNWDHMGKIWHHTFYNELRVAPEGHPVLLTGAPLKPRANRWKMAQVMCGTFDT 464
PI+ G++ +WD KI + + ++ HP+L++ A R R K+ ++M ++
Sbjct: 3 PIKDGMIEDWDLFEKILDYIYSKNIKSDSALHPLLMSEAAWNTRIKREKLTELMFEKYNV 62
Query: 465 P 467
P
Sbjct: 63 P 63
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 37.1 bits (82), Expect = 0.007
Identities = 17/35 (48%), Positives = 21/35 (60%)
Frame = +2
Query: 71 FKMCDEGVAALVVDNGSGMCKAGFAGDDAPRPCSP 175
FK+ A+V+DNG G+ K GFAGD PR P
Sbjct: 693 FKLDSHYNRAIVLDNGCGISKIGFAGDRVPRIIQP 727
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 36.7 bits (81), Expect = 0.010
Identities = 17/30 (56%), Positives = 19/30 (63%)
Frame = +2
Query: 86 EGVAALVVDNGSGMCKAGFAGDDAPRPCSP 175
E LV+D GS M K GFAGDDAP+ P
Sbjct: 1354 EAPTPLVIDVGSHMWKVGFAGDDAPKGVFP 1383
Score = 28.3 bits (60), Expect = 3.4
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = +1
Query: 166 VFPSIVGRPRHQ 201
VFP IVGRPRHQ
Sbjct: 1381 VFPPIVGRPRHQ 1392
>SB_45601| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 188
Score = 31.5 bits (68), Expect = 0.36
Identities = 22/75 (29%), Positives = 37/75 (49%)
Frame = +3
Query: 162 GRVPLDRGKAPPSGRHGRYGTEGLLCRRSGTSKRGILTLKYPIEHGIVTNWDHMGKIWHH 341
G VPL+R + G + YG EG++ + G +R +L LK I + N + +G +
Sbjct: 54 GSVPLERLEEIVQGWYDWYGQEGIVGYKGGNVERNLL-LKLGIP---LVNLEELGCPKYE 109
Query: 342 TFYNELRVAPEGHPV 386
Y +V +G+ V
Sbjct: 110 KLYRRYKVLRQGYIV 124
>SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 31.5 bits (68), Expect = 0.36
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -2
Query: 180 DRGEHGRGASSPAKPALHIPEPLSTTNAATP 88
D G R PAKPAL++P P S T ++ P
Sbjct: 78 DGGNTNRRTRIPAKPALNLPSPPSKTPSSVP 108
>SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8)
Length = 170
Score = 31.5 bits (68), Expect = 0.36
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -2
Query: 180 DRGEHGRGASSPAKPALHIPEPLSTTNAATP 88
D G R PAKPAL++P P S T ++ P
Sbjct: 78 DGGNTNRRTRIPAKPALNLPSPPSKTPSSVP 108
>SB_37048| Best HMM Match : Phage_tube (HMM E-Value=7.3)
Length = 270
Score = 30.7 bits (66), Expect = 0.63
Identities = 21/73 (28%), Positives = 36/73 (49%)
Frame = +3
Query: 162 GRVPLDRGKAPPSGRHGRYGTEGLLCRRSGTSKRGILTLKYPIEHGIVTNWDHMGKIWHH 341
G VPLDR + G + YG EG++ + G +R +L LK I + N + +G +
Sbjct: 136 GCVPLDRLEETVKGWYDWYGQEGIVGYKGGNVERDLL-LKLGIP---LVNLEELGCPKYE 191
Query: 342 TFYNELRVAPEGH 380
Y + + +G+
Sbjct: 192 KLYRRYKASCKGY 204
>SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 30.7 bits (66), Expect = 0.63
Identities = 13/16 (81%), Positives = 15/16 (93%)
Frame = -1
Query: 157 SIISCETGLAHTGAIV 110
SI+S ETGLAHTGAI+
Sbjct: 15 SIVSGETGLAHTGAII 30
>SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 30.3 bits (65), Expect = 0.83
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -2
Query: 180 DRGEHGRGASSPAKPALHIPEPLSTTNAATP 88
D G R PAKP+L++P P S T ++ P
Sbjct: 538 DGGNTNRRTRIPAKPSLNLPSPPSKTPSSVP 568
>SB_25587| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 202
Score = 30.3 bits (65), Expect = 0.83
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +3
Query: 252 TSKRGILTLKYPIEHGIVTNWDHMGK--IWHHTFYNELRVAPEGHPVLLTGAPLKPRANR 425
T K+GI K+ +H TN H + I T + LR PE P+ + G P +P+ +R
Sbjct: 112 TVKQGI---KHQNKHSKETNKGHTNQVVIVQTTSFYALRTTPEPFPMEIRGVPSEPKLHR 168
>SB_15696| Best HMM Match : DUF282 (HMM E-Value=2.5)
Length = 128
Score = 29.9 bits (64), Expect = 1.1
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = -1
Query: 286 GYLRVRIPLLLVPDLLHKSPSVPYRP*RPDGGAFPRSRGTRPRSIISCET 137
G+L + +P LL P L +PSV P + P R P IS T
Sbjct: 36 GFLEMDVPTLLAPCALATAPSVSEVPASTVSSSSPLRRSPGPSGTISAST 85
>SB_13555| Best HMM Match : B5 (HMM E-Value=1.4)
Length = 369
Score = 29.5 bits (63), Expect = 1.5
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = -3
Query: 383 WVPLGGDTQLIVEGMMPNLPHVIPVSDDSVFDGVFEGQDTSFAC 252
W P G + Q + + LP++ V D+ + G E ++ + AC
Sbjct: 71 WSPYGREFQRRINECIEGLPNIAAVHDNIIIYGTGETEEEAMAC 114
>SB_51157| Best HMM Match : Pkinase (HMM E-Value=0.00029)
Length = 161
Score = 29.1 bits (62), Expect = 1.9
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +2
Query: 71 FKMCDEGVAALVVDNGSGMCKAGFAGDDAPRPCSP-RSWEGPAIRAS-WSV 217
FK+CD G++ +VD+ + AG AP +P R +G IR+ WS+
Sbjct: 15 FKLCDFGISGQLVDSLAKTVDAGCKPYMAPERINPDRDMKGYDIRSDIWSL 65
>SB_37572| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 314
Score = 29.1 bits (62), Expect = 1.9
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +2
Query: 71 FKMCDEGVAALVVDNGSGMCKAGFAGDDAPRPCSP-RSWEGPAIRAS-WSV 217
FK+CD G++ +VD+ + AG AP +P R +G IR+ WS+
Sbjct: 168 FKLCDFGISGQLVDSLAKTVDAGCKPYMAPERINPDRDMKGYDIRSDIWSL 218
>SB_40639| Best HMM Match : CAP_GLY (HMM E-Value=0)
Length = 709
Score = 28.7 bits (61), Expect = 2.5
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Frame = +3
Query: 174 LDRGKAPPSGRHGRYGTEGLLCR----RSGTSKRGILTLKYPIEHGI 302
LD +A G HGR GTEG L R GT KR ++ + H +
Sbjct: 128 LDFFRASCGGIHGREGTEGKLNRNRKPEQGTGKRNMMLAETRHTHAV 174
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 28.7 bits (61), Expect = 2.5
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +3
Query: 285 PIEHGIVTNWDHMGKIWHHTFYNE 356
P + G + NWD +IW +TF E
Sbjct: 292 PFQKGFLVNWDVEKQIWDYTFGKE 315
>SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 28.3 bits (60), Expect = 3.4
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -2
Query: 180 DRGEHGRGASSPAKPALHIPEPLSTTNAATP 88
D G R AKPAL++P P S T ++ P
Sbjct: 38 DGGNTNRRTRIQAKPALNLPSPPSKTPSSVP 68
>SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 635
Score = 28.3 bits (60), Expect = 3.4
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 180 DRGEHGRGASSPAKPALHIPEPLSTTNAATP 88
D G R PAKP L IP P + T ++ P
Sbjct: 66 DGGNTNRRTRIPAKPTLTIPSPPTKTPSSVP 96
>SB_33208| Best HMM Match : Pepsin-I3 (HMM E-Value=4.7)
Length = 256
Score = 27.9 bits (59), Expect = 4.4
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = +2
Query: 146 GDDAPRPCSPRSWEGPAIRASWSVWDRRTLM*EIRHKQKRYPDPQIPHRTRNRH 307
GD P+ R PA+ SV + RT + + + P P + HRT+ H
Sbjct: 47 GDQVPKCAGIRQGFKPAVDTGCSVANSRTFLGNKKDLNQTQPSP-LAHRTQASH 99
>SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1974
Score = 27.9 bits (59), Expect = 4.4
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 383 SPAHWGSPQAQGQQMEDGPGHV 448
SP H+G+P+ E GPG V
Sbjct: 1344 SPEHYGAPRGDSSDEEGGPGDV 1365
>SB_10751| Best HMM Match : TNFR_c6 (HMM E-Value=7.6e-17)
Length = 738
Score = 27.5 bits (58), Expect = 5.9
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2
Query: 128 CKAGFAGDDAPRPCSPRSW 184
C+ GF DD R C P SW
Sbjct: 111 CEEGFYYDDITRDCQPCSW 129
>SB_31268| Best HMM Match : zf-C2H2 (HMM E-Value=5.04467e-44)
Length = 454
Score = 27.1 bits (57), Expect = 7.7
Identities = 17/51 (33%), Positives = 22/51 (43%)
Frame = +3
Query: 42 YNRTI*LKTNSRCATKELPRW**TMAPVCARPVSQEMMLLGRVPLDRGKAP 194
Y R LKT+ R T E P P+C RP +Q L + G+ P
Sbjct: 319 YARAFTLKTHQRVHTGEKP----FKCPICGRPFAQSSGLESHKRVHTGQKP 365
>SB_7266| Best HMM Match : UPAR_LY6 (HMM E-Value=0.015)
Length = 513
Score = 27.1 bits (57), Expect = 7.7
Identities = 21/65 (32%), Positives = 29/65 (44%)
Frame = +3
Query: 135 PVSQEMMLLGRVPLDRGKAPPSGRHGRYGTEGLLCRRSGTSKRGILTLKYPIEHGIVTNW 314
P++ ++L R+P D G GTEG L R T+ L P +HGI +N
Sbjct: 440 PIADLTVILKRLPTDFPMQANEGGFNISGTEGALVRVLITTLPKNLRDADPAKHGI-SNV 498
Query: 315 DHMGK 329
GK
Sbjct: 499 QGQGK 503
>SB_52978| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 879
Score = 27.1 bits (57), Expect = 7.7
Identities = 22/83 (26%), Positives = 33/83 (39%)
Frame = +2
Query: 182 WEGPAIRASWSVWDRRTLM*EIRHKQKRYPDPQIPHRTRNRH*LGSHGEDLASYLLQ*AA 361
++ P + S S+ RRT R++ P P RN H S + LASY A
Sbjct: 76 FDTPTPQRSGSITTRRTRKGFSRNESITNYTPSPPRTKRNTHAAKSRRDSLASYRSSYGA 135
Query: 362 CRPRGAPSPAHWGSPQAQGQQME 430
R + + S A Q ++
Sbjct: 136 SRAQTKQKTKNKKSLSADSQPLQ 158
>SB_8564| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 128
Score = 27.1 bits (57), Expect = 7.7
Identities = 24/75 (32%), Positives = 32/75 (42%)
Frame = +3
Query: 117 APVCARPVSQEMMLLGRVPLDRGKAPPSGRHGRYGTEGLLCRRSGTSKRGILTLKYPIEH 296
A VC R + +E + R R KA R G Y E R+ RGI +L P+
Sbjct: 54 AEVCTRSILEESEFVSRSRRRRQKAASLSRRGSY--EKFEARQ--CCGRGICSLYCPMMS 109
Query: 297 GIVTNWDHMGKIWHH 341
V N+ G I +H
Sbjct: 110 IFVNNY-FFGDITYH 123
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,764,042
Number of Sequences: 59808
Number of extensions: 442121
Number of successful extensions: 1181
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 1053
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1179
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 969807871
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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