Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30709
         (469 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   1.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.2  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   2.2  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   3.8  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    21   5.0  
EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate c...    21   6.6  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               21   6.6  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    21   6.6  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    21   6.6  

>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -1

Query: 223 VPY-RP*RPDGGAFPRSRGTRPRSIISCETGLAHTGAIVYYQRG 95
           VPY R  RPD   +  +      ++I+    ++HTG +V+   G
Sbjct: 82  VPYNRVWRPDTILYNNADPQYSSAVINTNVIVSHTGEVVWLSHG 125


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 215 VWDRRTLM*EIRHKQKRYPD 274
           VW+R T +  I  KQK +P+
Sbjct: 523 VWERDTRVLPINRKQKVFPN 542


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -2

Query: 159 GASSPAKPALHIPEPLSTTNAATPSSHIL 73
           G + PA+  +HIPE         PS H L
Sbjct: 22  GWNVPAEELIHIPEHWLVYPEPNPSLHYL 50


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 14/42 (33%), Positives = 16/42 (38%)
 Frame = +3

Query: 177 DRGKAPPSGRHGRYGTEGLLCRRSGTSKRGILTLKYPIEHGI 302
           D  K PPS R  R        R +G   RG    K  + H I
Sbjct: 403 DPAKFPPSFRISRVAAYNTYGRNAGLRYRGPKQNKPKVLHAI 444


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +2

Query: 122 GMCKAGFAGD 151
           GMCK G +GD
Sbjct: 130 GMCKEGISGD 139


>EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate
           carboxykinase protein.
          Length = 118

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +1

Query: 322 WGRFGIIPSTMSCVSP 369
           +G FG+ P T S  +P
Sbjct: 64  YGFFGVAPGTSSATNP 79


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -2

Query: 264 LFCLCLISYIRV 229
           LF LC++SY+ V
Sbjct: 8   LFTLCIVSYMMV 19


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 11/44 (25%), Positives = 20/44 (45%)
 Frame = +3

Query: 186 KAPPSGRHGRYGTEGLLCRRSGTSKRGILTLKYPIEHGIVTNWD 317
           K  P G +G  G + +L       KRG++  +  ++    T +D
Sbjct: 180 KRAPMGFYGTRGKKIILDALEELDKRGVMDFQIGLQRKKDTTFD 223


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 11/44 (25%), Positives = 20/44 (45%)
 Frame = +3

Query: 186 KAPPSGRHGRYGTEGLLCRRSGTSKRGILTLKYPIEHGIVTNWD 317
           K  P G +G  G + +L       KRG++  +  ++    T +D
Sbjct: 180 KRAPMGFYGTRGKKIILDALEELDKRGVMDFQIGLQRKKDTTFD 223


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,295
Number of Sequences: 438
Number of extensions: 3880
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12559158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)