Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30708
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomy...    30   0.36 
SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr 1...    29   0.48 
SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces po...    29   0.83 
SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces ...    27   2.5  
SPAC869.07c |mel1||alpha-galactosidase |Schizosaccharomyces pomb...    26   5.9  
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   7.8  
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    25   7.8  
SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomy...    25   7.8  

>SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 12/21 (57%), Positives = 17/21 (80%)
 Frame = +2

Query: 590 IKLERKRQRNRVAASKCRRRK 652
           +K  R  +RNR+AASKCR++K
Sbjct: 268 MKRRRFLERNRIAASKCRQKK 288


>SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 588

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 408 EALDKLHHGEAVTPLGRRVYADLDRPLERYPTPM 509
           EA + L+H E VT   ++ +   DRP+  YP  M
Sbjct: 86  EATEALYHAEQVTEERKKHFEHHDRPIGSYPAGM 119


>SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 380

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 19/61 (31%), Positives = 30/61 (49%)
 Frame = +2

Query: 464 ICRFGQAARAIPHSHVKDEPQTVPSAASTPPLSPIDMDTQEKIKLERKRQRNRVAASKCR 643
           I R  +A++ IP   +    + VPS+   P      +DT+ K   +RKR  N+   SK +
Sbjct: 326 INRLEKASKTIPQGRLDSFFKPVPSSPKKP------VDTKSKGSAKRKRDSNKGGESKKK 379

Query: 644 R 646
           R
Sbjct: 380 R 380


>SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 305

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
 Frame = +2

Query: 404 RRSARQAAPRRGSDAARTSSICRFGQAA--RAIPHSHVKDEPQTVPSAASTPPLSPIDMD 577
           RR       ++ S   R+SS   F  A+  ++  H+  K     VP  +S+PPLS     
Sbjct: 148 RRHQNNQHSQQYSSQERSSSYNNFEDASSPQSSYHTPTKRRKNAVPRKSSSPPLSSTKHA 207

Query: 578 TQEKIKLERKRQRNRV 625
            Q   +   +R  +R+
Sbjct: 208 PQSTERRPVRRSESRL 223


>SPAC869.07c |mel1||alpha-galactosidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 436

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -1

Query: 525 WGSSFTWEWGIALA 484
           WG  F W WG  +A
Sbjct: 193 WGEDFVWNWGNTIA 206


>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 751

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 212 GNVHESLHPFSPRQITNVEARI 277
           GNV   LHP +P +I  VE ++
Sbjct: 400 GNVELKLHPQTPDRIVKVERKV 421


>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -1

Query: 96  VFAPNASVSLNSLRELYNFFLRLTHVLLP 10
           + APN +  L   REL NFF  L  V +P
Sbjct: 417 IIAPNYTRLLELDRELSNFFKELIEVNIP 445


>SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 386

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 360 AVAPTEEQEMYARPFVEALDKLHHGEAVTPLGR 458
           A    +E E YA+PFVE  +K +   A    G+
Sbjct: 190 ASGKADESEFYAQPFVEEGEKDYDEAAAAKAGK 222


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,955,309
Number of Sequences: 5004
Number of extensions: 60443
Number of successful extensions: 193
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)