Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30708
(687 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55438| Best HMM Match : No HMM Matches (HMM E-Value=.) 62 4e-10
SB_1576| Best HMM Match : bZIP_1 (HMM E-Value=1.1e-11) 56 2e-08
SB_59208| Best HMM Match : No HMM Matches (HMM E-Value=.) 55 6e-08
SB_39621| Best HMM Match : Extensin_2 (HMM E-Value=0.078) 33 0.22
SB_1224| Best HMM Match : bZIP_1 (HMM E-Value=8e-10) 33 0.22
SB_16428| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.50
SB_282| Best HMM Match : zf-CCCH (HMM E-Value=2.4e-10) 32 0.50
SB_41032| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.50
SB_11068| Best HMM Match : bZIP_1 (HMM E-Value=9.2) 32 0.50
SB_47663| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.66
SB_41031| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.66
SB_59580| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_58596| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_33399| Best HMM Match : Ank (HMM E-Value=0) 29 2.7
SB_58506| Best HMM Match : Vps52 (HMM E-Value=0.099) 29 4.7
SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18) 29 4.7
SB_56601| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_52346| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.3) 28 6.2
SB_40320| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_21723| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_29610| Best HMM Match : Extensin_2 (HMM E-Value=2.3) 28 8.1
SB_13884| Best HMM Match : LRR_1 (HMM E-Value=6.3e-06) 28 8.1
SB_22224| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_4695| Best HMM Match : SAM_1 (HMM E-Value=0.012) 28 8.1
>SB_55438| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 391
Score = 62.1 bits (144), Expect = 4e-10
Identities = 29/49 (59%), Positives = 38/49 (77%)
Frame = +2
Query: 509 VKDEPQTVPSAASTPPLSPIDMDTQEKIKLERKRQRNRVAASKCRRRKL 655
++++ Q VP TPPL PID+D QE +K ERK+ RNR+AASKCR+RKL
Sbjct: 109 MEEQSQVVPH---TPPLPPIDLDLQEAVKNERKKLRNRLAASKCRKRKL 154
>SB_1576| Best HMM Match : bZIP_1 (HMM E-Value=1.1e-11)
Length = 382
Score = 56.4 bits (130), Expect = 2e-08
Identities = 29/51 (56%), Positives = 35/51 (68%), Gaps = 3/51 (5%)
Frame = +2
Query: 512 KDEPQTVP---SAASTPPLSPIDMDTQEKIKLERKRQRNRVAASKCRRRKL 655
K E Q P S PL PID++ QE +K ERK+Q+NRVAASKCRR+KL
Sbjct: 276 KYEEQAAPPHNSGLGGLPLPPIDLELQEIVKRERKKQKNRVAASKCRRKKL 326
>SB_59208| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 584
Score = 54.8 bits (126), Expect = 6e-08
Identities = 28/61 (45%), Positives = 38/61 (62%)
Frame = +2
Query: 473 FGQAARAIPHSHVKDEPQTVPSAASTPPLSPIDMDTQEKIKLERKRQRNRVAASKCRRRK 652
+G + + K E QT S L PID++ QE +K ERK+QRNR+A+SKCR+RK
Sbjct: 439 YGNVVKQEIPGNFKLESQTTESGV----LQPIDLEIQEVVKRERKKQRNRIASSKCRKRK 494
Query: 653 L 655
L
Sbjct: 495 L 495
Score = 32.7 bits (71), Expect = 0.29
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Frame = +3
Query: 261 MLKLGSPELEKLI--IQNGMVXXXXXXXXXXVLF--PAVAPTEEQEMYARPFVEALDKLH 428
+LKL SP++EK++ +Q+G+ P PT EQ Y+R F EAL LH
Sbjct: 259 LLKLASPDIEKMLMSLQSGISASPTPGSLFNSTAHGPVNPPTTEQ--YSRGFTEALQDLH 316
Query: 429 HGEA 440
+A
Sbjct: 317 DRQA 320
>SB_39621| Best HMM Match : Extensin_2 (HMM E-Value=0.078)
Length = 539
Score = 33.1 bits (72), Expect = 0.22
Identities = 21/92 (22%), Positives = 41/92 (44%)
Frame = +2
Query: 362 SSTYGGTRNVCATFRRSARQAAPRRGSDAARTSSICRFGQAARAIPHSHVKDEPQTVPSA 541
++ Y +R+ + +R AR GS + +SS + +K P+++P
Sbjct: 259 AANYPSSRSASMSIKRPARPERSTAGSTSTESSSSAASSVTVASDTGYQMKSPPESLP-- 316
Query: 542 ASTPPLSPIDMDTQEKIKLERKRQRNRVAASK 637
S PPL P D + + + R R+ +A++
Sbjct: 317 -SPPPLPPQDYEEEPLHNKRKVRPRHERSATE 347
>SB_1224| Best HMM Match : bZIP_1 (HMM E-Value=8e-10)
Length = 496
Score = 33.1 bits (72), Expect = 0.22
Identities = 12/23 (52%), Positives = 20/23 (86%)
Frame = +2
Query: 584 EKIKLERKRQRNRVAASKCRRRK 652
E++K+ R+RQRN+ AAS+CR ++
Sbjct: 286 EELKIIRRRQRNKQAASRCREKR 308
>SB_16428| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1005
Score = 31.9 bits (69), Expect = 0.50
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +2
Query: 428 PRRGSDAARTSSICRFG-QAARAIPHSHVKDEPQTVPSAASTPPLSPIDMDTQEKIKLER 604
P + D + S++ R Q ++ I VK + ++ +TPP SP +D +IK+ER
Sbjct: 793 PVQEVDDNKPSNVYRMARQYSKRITDDKVKQDIRSRSRGENTPPKSPTRLDLSPRIKIER 852
>SB_282| Best HMM Match : zf-CCCH (HMM E-Value=2.4e-10)
Length = 508
Score = 31.9 bits (69), Expect = 0.50
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +2
Query: 494 IPHSHVKDEPQTVPSAASTPPLSPIDMDTQEKIKLERKRQRNRVAASKCR 643
+P + DEP V SA + PL+PI+ ++K+ ++ N KCR
Sbjct: 10 VPRHKMADEPAQVASAENKLPLTPIENARRQKVCRFYAKKGNCRFGEKCR 59
>SB_41032| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 162
Score = 31.9 bits (69), Expect = 0.50
Identities = 12/28 (42%), Positives = 22/28 (78%)
Frame = +2
Query: 569 DMDTQEKIKLERKRQRNRVAASKCRRRK 652
++ +E+ + + +RQRN+VAASKCR ++
Sbjct: 78 ELTPEEETRRKVRRQRNKVAASKCRLKR 105
>SB_11068| Best HMM Match : bZIP_1 (HMM E-Value=9.2)
Length = 106
Score = 31.9 bits (69), Expect = 0.50
Identities = 12/28 (42%), Positives = 22/28 (78%)
Frame = +2
Query: 569 DMDTQEKIKLERKRQRNRVAASKCRRRK 652
++ +E+ + + +RQRN+VAASKCR ++
Sbjct: 70 ELTPEEETRRKVRRQRNKVAASKCRLKR 97
>SB_47663| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1409
Score = 31.5 bits (68), Expect = 0.66
Identities = 25/79 (31%), Positives = 31/79 (39%)
Frame = +1
Query: 382 KKCMRDLSSKR*TSCTTARQ*RRSDVEYMPIWTGR*SDTPLPCEGRAPDGAERGQHAAAI 561
KKC + T+C TA Q R WT C R DG R +H
Sbjct: 550 KKCQCEAGYDPSTNCETALQARDGGFGAWSEWTN--------CS-RGCDGGNRRRHRFCN 600
Query: 562 THRHGHSGKDQTGEKETEE 618
+ H GKD +GE+ EE
Sbjct: 601 SPYPAHGGKDCSGERIQEE 619
>SB_41031| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 31.5 bits (68), Expect = 0.66
Identities = 17/38 (44%), Positives = 28/38 (73%)
Frame = +2
Query: 539 AASTPPLSPIDMDTQEKIKLERKRQRNRVAASKCRRRK 652
A ST ++P + +E+ KL +R+RN+VAASKCR+++
Sbjct: 87 AESTEMVTP---EEEERRKL--RRERNKVAASKCRQKR 119
>SB_59580| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 999
Score = 30.3 bits (65), Expect = 1.5
Identities = 10/37 (27%), Positives = 21/37 (56%)
Frame = +2
Query: 575 DTQEKIKLERKRQRNRVAASKCRRRKLGTYFQSWKRK 685
+ QE++K ++K + + + + + YF+SWK K
Sbjct: 813 EKQERLKAKKKEEEEKELEKRSKTKDAKKYFESWKSK 849
>SB_58596| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 261
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -1
Query: 534 GTVWGSSFTWEWGIALAACPNRHILDV 454
G++ G + WE GIA+A C H+L+V
Sbjct: 60 GSIHGEAHVWEGGIAIAGC-KFHLLEV 85
>SB_33399| Best HMM Match : Ank (HMM E-Value=0)
Length = 1416
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +2
Query: 482 AARAIPHSHVKDEPQTVPSAASTPPLSPI 568
+A + P++ P T PSA+S+P +SPI
Sbjct: 1221 SATSPPYTSASPVPTTTPSASSSPTISPI 1249
>SB_58506| Best HMM Match : Vps52 (HMM E-Value=0.099)
Length = 775
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +2
Query: 359 RSSTYGGTRNVCATFRRSARQAAPRRGSDAARTSS 463
R ST GGTR+ ATF+ + A R A+ SS
Sbjct: 210 RLSTKGGTRSAIATFKMTVASPAKSREDTASLRSS 244
>SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18)
Length = 796
Score = 28.7 bits (61), Expect = 4.7
Identities = 20/67 (29%), Positives = 27/67 (40%)
Frame = +2
Query: 356 SRSSTYGGTRNVCATFRRSARQAAPRRGSDAARTSSICRFGQAARAIPHSHVKDEPQTVP 535
SR + G T ++ + PR + T SI + AIP H+ P T P
Sbjct: 227 SRQNVSGQAGPTNMTQSSTSHSSTPRHHGEPQTTISITSI--ISSAIPRGHLPTTPSTTP 284
Query: 536 SAASTPP 556
A TPP
Sbjct: 285 QA--TPP 289
>SB_56601| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 327
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = +2
Query: 494 IPHSHVKDEPQTVPSAASTPPLSPIDMDTQEKIK 595
+PH+ V+ PQT+P+ T P ++ ++E ++
Sbjct: 168 MPHTAVQQSPQTLPTPTHTTPRVDPEITSEESLE 201
>SB_52346| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.3)
Length = 178
Score = 28.3 bits (60), Expect = 6.2
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = +2
Query: 500 HSHVKDEP--QTVPSAASTPPLSPIDMDTQEKIKLERKRQRNRVAASKCRRRKLGTYF 667
H +K+EP + + S+AST P T+E KL+ K + S+ RKL +
Sbjct: 120 HIFIKEEPKQEILQSSASTLCDKPTGSSTEELKKLQSKVEELEEQTSRLTTRKLNLQY 177
>SB_40320| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 101
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +2
Query: 326 YPYSGSACLISRSSTYGGTRNVCATFRRSARQAAPRRGSDAARTSSI 466
+PY S+ SRSS GG + T + + R++ + G +T +
Sbjct: 33 HPYPTSSRASSRSSARGGAKTTKTTKKCTTRKSRTQNGDTTTKTKCV 79
>SB_21723| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1512
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = +2
Query: 494 IPHSHVKDEPQTVPSAASTPPLSPIDMDTQEKIK 595
+PH+ V+ PQT+P+ T P ++ ++E ++
Sbjct: 296 MPHTAVQQSPQTLPTPTHTTPRVDPEITSEESLE 329
>SB_29610| Best HMM Match : Extensin_2 (HMM E-Value=2.3)
Length = 1353
Score = 27.9 bits (59), Expect = 8.1
Identities = 24/84 (28%), Positives = 37/84 (44%)
Frame = +2
Query: 404 RRSARQAAPRRGSDAARTSSICRFGQAARAIPHSHVKDEPQTVPSAASTPPLSPIDMDTQ 583
++ ARQA PR+ S +TS P H K + ++ T P D D Q
Sbjct: 754 KQVARQARPRQASRKTKTSK-----------PQDHGKQATRPRQASHKTRTKKPQDQDKQ 802
Query: 584 EKIKLERKRQRNRVAASKCRRRKL 655
E+ +++ R R A+ K + KL
Sbjct: 803 EQ---DKQAARPRHASCKTKASKL 823
>SB_13884| Best HMM Match : LRR_1 (HMM E-Value=6.3e-06)
Length = 575
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = -1
Query: 498 GIALAACPNRHILDVRAASLPRRGAACLALRRKVAHTFLVP 376
G+ +AAC +H+ D+RA L R + L L V F VP
Sbjct: 82 GLLMAACKVQHLGDIRANILHPRNVSSLVLH--VVAGFTVP 120
>SB_22224| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1106
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = +2
Query: 512 KDEPQTVPSAASTPPL---SPIDMDTQEKIKLERKRQRNRVAASKCRRRK 652
+DE + +PS A+ PPL P TQ ++ E ++R + K +R +
Sbjct: 948 EDEYEILPSEAAAPPLPDTRPGASPTQSEVDAEESKKREKKDKEKEKRER 997
>SB_4695| Best HMM Match : SAM_1 (HMM E-Value=0.012)
Length = 1348
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -2
Query: 254 SGE-ERTGAAIRERFPPRPTSKVRGLLRFSTGPLR 153
SGE R G+ I+E PPRP K R + + PL+
Sbjct: 380 SGEGPRHGSLIKEE-PPRPPQKTRPMNEYQESPLK 413
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,059,440
Number of Sequences: 59808
Number of extensions: 502931
Number of successful extensions: 1538
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1532
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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