Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30708
         (687 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g35000.1 68417.m04963 L-ascorbate peroxidase 3 (APX3) identic...    31   0.72 
At5g23770.1 68418.m02791 agenet domain-containing protein contai...    31   0.95 
At5g51150.1 68418.m06342 expressed protein similar to unknown pr...    29   2.2  
At5g42590.1 68418.m05185 cytochrome P450 71A16, putative (CYP71A...    29   3.8  
At4g23570.2 68417.m03396 phosphatase-related low similarity to p...    28   5.0  
At4g23570.1 68417.m03395 phosphatase-related low similarity to p...    28   5.0  
At1g67940.1 68414.m07758 ABC transporter family protein similar ...    28   5.0  
At2g32230.1 68415.m03938 pentatricopeptide (PPR) repeat-containi...    28   6.7  
At1g21160.1 68414.m02646 eukaryotic translation initiation facto...    28   6.7  
At1g10510.1 68414.m01183 leucine-rich repeat family protein simi...    28   6.7  
At5g23780.1 68418.m02792 agenet domain-containing protein contai...    27   8.8  
At3g56910.1 68416.m06330 expressed protein                             27   8.8  
At1g31930.2 68414.m03924 extra-large guanine nucleotide binding ...    27   8.8  
At1g31930.1 68414.m03923 extra-large guanine nucleotide binding ...    27   8.8  

>At4g35000.1 68417.m04963 L-ascorbate peroxidase 3 (APX3) identical
           to ascorbate peroxidase 3 [Arabidopsis thaliana]
           GI:2444019, L-ascorbate peroxidase [Arabidopsis
           thaliana] gi|1523791|emb|CAA66926; similar to ascorbate
           peroxidase [Gossypium hirsutum] gi|1019946|gb|AAB52954
          Length = 287

 Score = 31.1 bits (67), Expect = 0.72
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +1

Query: 454 DVEYMPIWTGR*SDTPLPCEGRAPDGAERGQHAAAITHRHGHSGKD 591
           D+ ++P   GR      P EGR PD  +  QH   + +R G S KD
Sbjct: 110 DIVFVP---GRKDSNVCPKEGRLPDAKQGFQHLRDVFYRMGLSDKD 152


>At5g23770.1 68418.m02791 agenet domain-containing protein contains
           Pfam PF05641: Agenet domain
          Length = 438

 Score = 30.7 bits (66), Expect = 0.95
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +2

Query: 491 AIPHSHVKDEPQTVPSAASTPPLSPIDMDTQEKIKLERKRQRNR 622
           ++ +++  D P T P    TPPL  I+  TQ K   ++   RN+
Sbjct: 176 SVRNANESDPPLTPPPGIITPPLKQIEAGTQRKALSKKTLPRNQ 219


>At5g51150.1 68418.m06342 expressed protein similar to unknown
           protein (gb|AAD46013.1)
          Length = 531

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
 Frame = +2

Query: 518 EPQTVPSAASTPPLSPIDMDTQE-KIKLERKRQRNRVAASKCRRRK 652
           +P   PS+ S PP+SP+  D+ E + +L    +R R A ++ +RR+
Sbjct: 7   KPDLDPSS-SPPPISPLSQDSSEAERRLREAEERLRDAMAELQRRQ 51


>At5g42590.1 68418.m05185 cytochrome P450 71A16, putative (CYP71A16)
           Identical to Cytochrome P450 71A16 (SP:Q9FH66)
           [Arabidopsis thaliana]
          Length = 497

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +2

Query: 185 P*PWMLGGVGNVHE-SLHPFSPRQITNVEAR 274
           P PW L  +GN+H+ SLHP   R ++++ AR
Sbjct: 34  PSPWRLPVIGNLHQLSLHPH--RALSSLSAR 62


>At4g23570.2 68417.m03396 phosphatase-related low similarity to
           phosphoprotein phosphatase [Mus musculus] GI:567040;
           contains Pfam profiles PF00515: TPR Domain, PF05002: SGS
           domain, PF04969: CS domain
          Length = 350

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +2

Query: 509 VKDEPQTVPSAASTPPLSPIDMDTQEKIKLERKRQRNRVAAS 634
           V+  P T+PS+ + PP+S +D+    K + E  ++   V  +
Sbjct: 125 VQPVPSTLPSSVTAPPVSELDVTPTAKYRHEYYQKPEEVVVT 166


>At4g23570.1 68417.m03395 phosphatase-related low similarity to
           phosphoprotein phosphatase [Mus musculus] GI:567040;
           contains Pfam profiles PF00515: TPR Domain, PF05002: SGS
           domain, PF04969: CS domain
          Length = 350

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +2

Query: 509 VKDEPQTVPSAASTPPLSPIDMDTQEKIKLERKRQRNRVAAS 634
           V+  P T+PS+ + PP+S +D+    K + E  ++   V  +
Sbjct: 125 VQPVPSTLPSSVTAPPVSELDVTPTAKYRHEYYQKPEEVVVT 166


>At1g67940.1 68414.m07758 ABC transporter family protein similar to
           ABC transporters: GB:BAA77876 [Escherichia coli],
           GB:P07655 [Escherichia coli]; contains Pfam profile:
           PF00005 ABC transporter
          Length = 263

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = +2

Query: 440 SDAARTSSICRFGQAARAIPHSHVKDEPQTVPSAASTPPLSPIDMDTQEKIKLERKRQR 616
           S A +T +    GQA R      + +EP+ +     T  L PI  +  E + ++ K+QR
Sbjct: 151 SFAKKTGAELSVGQAQRVALARTLANEPEVLLLDEPTSALDPISTENIEDVIVKLKKQR 209


>At2g32230.1 68415.m03938 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 572

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 19/65 (29%), Positives = 25/65 (38%)
 Frame = +2

Query: 428 PRRGSDAARTSSICRFGQAARAIPHSHVKDEPQTVPSAASTPPLSPIDMDTQEKIKLERK 607
           PR  S        CR G A +A        E + VP       L  + MDT+   K+ + 
Sbjct: 209 PRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKT 268

Query: 608 RQRNR 622
            QR R
Sbjct: 269 LQRLR 273


>At1g21160.1 68414.m02646 eukaryotic translation initiation factor 2
           family protein / eIF-2 family protein similar to
           SP|O60841 Translation initiation factor IF-2 {Homo
           sapiens}; contains Pfam profiles PF00009: Elongation
           factor Tu GTP binding domain, PF03144: Elongation factor
           Tu domain 2
          Length = 1088

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 165 RAAERILLVIEGGLHAVAGIPNHVFAPN 82
           +AA+ I +  +G  HA+AG   HV  PN
Sbjct: 786 KAAQGIKIAAQGLEHAIAGTALHVIGPN 813


>At1g10510.1 68414.m01183 leucine-rich repeat family protein similar
           to ribonuclease inhibitor (GI:164639) [Sus scrofa
           (pig)]; contains Pfam PF00560: Leucine Rich Repeat
           domains
          Length = 605

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -1

Query: 465 ILDVRAASLPRRGAACLALRRKVAHTFLVPP*VLLREIR 349
           +LD+RA  L   GA+CLA   KV +  L    +   EIR
Sbjct: 511 VLDLRANGLRDEGASCLARSLKVVNEALTSVDLGFNEIR 549


>At5g23780.1 68418.m02792 agenet domain-containing protein contains
           Pfam PF05641: Agenet domain
          Length = 426

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +2

Query: 479 QAARAIPHSHVKDEPQTVPSAASTPPLSPIDMDTQEK 589
           + + ++ +++  D P T     +TPPL  I+ +TQ K
Sbjct: 174 ETSDSVRNANESDPPVTPRPGITTPPLKQIEAETQRK 210


>At3g56910.1 68416.m06330 expressed protein
          Length = 148

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +2

Query: 512 KDEPQTVPSAASTPPLSPIDMDTQEKIKLERKRQRNRVAASKCRRRKL 655
           K+EP+TV +A     L     + +EK+ LE + +       + RR++L
Sbjct: 78  KEEPKTVVAAVPVDKLPLESKEAKEKLLLELRLKMKLAKKIRLRRKRL 125


>At1g31930.2 68414.m03924 extra-large guanine nucleotide binding
           protein, putative / G-protein, putative similar to
           extra-large G-protein (XLG) [Arabidopsis thaliana]
           GI:3201680; contains Pfam profile PF00503: G-protein
           alpha subunit
          Length = 848

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 20/67 (29%), Positives = 26/67 (38%), Gaps = 5/67 (7%)
 Frame = +2

Query: 248 RQITNVEARIS*VGKID-----HSERYGDNRYPYSGSACLISRSSTYGGTRNVCATFRRS 412
           R+IT +E RI  +  +      H   Y D RY   G   +         TR +CA F   
Sbjct: 343 REITKLELRILKLANVQCPRDTHFWVYDDGRYEEEGQNNIRGNIWEKASTRFMCALFSLP 402

Query: 413 ARQAAPR 433
             Q  PR
Sbjct: 403 VPQGQPR 409


>At1g31930.1 68414.m03923 extra-large guanine nucleotide binding
           protein, putative / G-protein, putative similar to
           extra-large G-protein (XLG) [Arabidopsis thaliana]
           GI:3201680; contains Pfam profile PF00503: G-protein
           alpha subunit
          Length = 848

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 20/67 (29%), Positives = 26/67 (38%), Gaps = 5/67 (7%)
 Frame = +2

Query: 248 RQITNVEARIS*VGKID-----HSERYGDNRYPYSGSACLISRSSTYGGTRNVCATFRRS 412
           R+IT +E RI  +  +      H   Y D RY   G   +         TR +CA F   
Sbjct: 343 REITKLELRILKLANVQCPRDTHFWVYDDGRYEEEGQNNIRGNIWEKASTRFMCALFSLP 402

Query: 413 ARQAAPR 433
             Q  PR
Sbjct: 403 VPQGQPR 409


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,978,094
Number of Sequences: 28952
Number of extensions: 340878
Number of successful extensions: 1013
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1013
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)