Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30707
         (665 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos...    29   0.60 
SPCC737.05 |||peroxin Pex28/29|Schizosaccharomyces pombe|chr 3||...    27   2.4  
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc...    27   3.2  
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    27   3.2  
SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr 1|...    26   4.2  
SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4 |Schizosac...    25   7.4  

>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 29.1 bits (62), Expect = 0.60
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = +2

Query: 515 VQSM*QFSHQFVTSSMDKGDCTKIFYSK*QENLSSTTIDEPTRPGFVCHQ 664
           +Q M Q S      + DK       Y   Q  ++++  D+P  PG++C++
Sbjct: 138 IQQMFQVSSDQWRETQDKMASATPIYKPNQRRIAASVPDKPPPPGYICYR 187


>SPCC737.05 |||peroxin Pex28/29|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 264

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = +3

Query: 252 FLIEKLK-RVERII*ISNW**FYGFLPKLKNSNVDFQG*NIDSVLNIDLRNGKKSVIRLI 428
           FL+  L+  ++R + I+ W       PKL++  + F     D V  + +RN    V R +
Sbjct: 129 FLLAYLRISIDRYLPIAIWIGLISLHPKLRSYLIQFYSAKRDHVPYLQIRNELAQVWRHV 188

Query: 429 DLKSPSLT 452
           D+     T
Sbjct: 189 DISGSQTT 196


>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +2

Query: 341 FECRFSRVKYRFSTKYRFKKWQKIGYSINRSQIAIPNLKVITF 469
           F+C F+ V  RFS + R K    + + I  S+IA  N +   F
Sbjct: 284 FDCFFASVSTRFSHELRLKP-VAVAHGIKNSEIASCNYEARKF 325


>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 956

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
 Frame = +2

Query: 353 FSRVKYRFSTKYRFKKWQKIGYSIN-----------RSQIAIPNLKVITFAKCLIHSKIF 499
           F ++ Y F+T   F+++  +GY I            +S++         +  CLI  KI 
Sbjct: 94  FGQLHYDFTTLLNFQRYLDLGYGIEDVKIKENEDIVKSKVGKKPTSSDFYIPCLIKPKI- 152

Query: 500 LSPFEVQSM*QFSHQFVTSSMDKGDCTKIFY 592
           ++PFE +    F     + ++  G   ++FY
Sbjct: 153 ITPFEWEG--NFKQVIYSPTVYNGSFKRLFY 181


>SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 578

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 396 LNRYLVLNRYFTLENRHSNFSVLVKNHKI 310
           LN YLV  + +T+E  +   S LV N KI
Sbjct: 544 LNGYLVKPKEYTMEGENPPLSALVANCKI 572


>SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +3

Query: 546 SLHLAWTKATAPKSFIQNNKKIYPPQQLMNQLDQ 647
           +L +++  + + +    NN+KI  PQ ++N LD+
Sbjct: 49  TLFVSFLTSASGEIATNNNRKILMPQDVLNALDE 82


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,691,325
Number of Sequences: 5004
Number of extensions: 53441
Number of successful extensions: 126
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)