Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30707
         (665 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47606| Best HMM Match : 7tm_1 (HMM E-Value=0.0015)                  31   0.84 
SB_3847| Best HMM Match : Sec1 (HMM E-Value=8.8e-14)                   30   1.9  
SB_39950| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_20138| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_9764| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-05)                  28   7.9  

>SB_47606| Best HMM Match : 7tm_1 (HMM E-Value=0.0015)
          Length = 293

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +2

Query: 320 FFTKTEKFECRFSRVKYRFSTKYRFKKWQKIGYSI 424
           FFTK+ + + R  + K R    Y  KKW  I  SI
Sbjct: 2   FFTKSPRIQKRVEKRKARLLVSYDIKKWSDINNSI 36


>SB_3847| Best HMM Match : Sec1 (HMM E-Value=8.8e-14)
          Length = 605

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/40 (42%), Positives = 24/40 (60%)
 Frame = -3

Query: 258 SKKIRNYIFAIIRYSVNFTLILISSILMLYADADFNTSKG 139
           S++ R Y+F+++RYS+   LIL SS L L A      S G
Sbjct: 482 SREFRQYMFSLVRYSL---LILTSSDLRLRASVQNTDSTG 518


>SB_39950| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1249

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 371 RFSTKYRFKKWQKIGYSINRSQIA 442
           R++ K +  KW+K GY +  SQIA
Sbjct: 416 RYTKKLQVSKWEKFGYGVMVSQIA 439


>SB_20138| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 860

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 19/69 (27%), Positives = 29/69 (42%)
 Frame = -3

Query: 570 PLSMLDVTNWCENCYIDCTSNGDKNIFEWIKHFANVITFRLGMAI*DRLIE*PIFCHFLN 391
           P    DV NWC NC + C    +  + E+      ++T R G  +   ++E P       
Sbjct: 583 PCMATDVENWCRNCQV-CQQRRNP-VPEYKAPLRPIVTSRTGELVTMDVVEYPKSSPGSQ 640

Query: 390 RYLVLNRYF 364
             LV+ R F
Sbjct: 641 YCLVMGRSF 649


>SB_9764| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-05)
          Length = 434

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = -3

Query: 354 NRHSNFSV--LVKNHKIITN*KFKLCAPRALIFQSKKIRNYIFAIIRYSVNFTLILISSI 181
           N HSN S     K+ K+  N  F +C P +  F    ++ +    + Y ++FT+ +   +
Sbjct: 300 NIHSNNSQGRRFKDTKMFINAFFAICIPYSTYFVYNLVKRFAGLELSYELDFTIRMSGGV 359

Query: 180 LMLY 169
           L  +
Sbjct: 360 LATF 363


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,044,182
Number of Sequences: 59808
Number of extensions: 356460
Number of successful extensions: 754
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)