Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30707
         (665 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006673-6|AAF39926.2|  335|Caenorhabditis elegans Serpentine re...    30   1.7  
Z81502-2|CAB04106.2|  720|Caenorhabditis elegans Hypothetical pr...    29   3.9  
AC084156-4|AAK68488.2|  251|Caenorhabditis elegans Transforming ...    28   6.8  

>AC006673-6|AAF39926.2|  335|Caenorhabditis elegans Serpentine
           receptor, class h protein7 protein.
          Length = 335

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = -3

Query: 594 E*KILVQSPLSMLDVTNWCENCYIDCTSNGDKNIFEWIKHFANV 463
           E K+ ++      +   WC+NC+     N D N+F W    A V
Sbjct: 163 EYKLKMEQRFGQFETYMWCDNCFF---FNFDSNLFRWFFDIAAV 203


>Z81502-2|CAB04106.2|  720|Caenorhabditis elegans Hypothetical
           protein F14B6.2 protein.
          Length = 720

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 10/42 (23%), Positives = 24/42 (57%)
 Frame = -3

Query: 288 LCAPRALIFQSKKIRNYIFAIIRYSVNFTLILISSILMLYAD 163
           +C PR  +F    + +++F ++ +  + T+ ++SSI+    D
Sbjct: 620 ICVPRWSLFVLHIVFDFLFLVVGFVTSLTIAIMSSIMYFLID 661


>AC084156-4|AAK68488.2|  251|Caenorhabditis elegans Transforming
           growth factor betafamily protein 3 protein.
          Length = 251

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +2

Query: 335 EKFECRFSRVKYRFSTKYRFKKWQKIGYSINRSQIAIPN 451
           ++FE R +  KY F   + F KW K   S    +I I N
Sbjct: 82  DRFEIRETLDKYHFDISHLFHKWMKQKSSDKMIKIEITN 120


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,680,450
Number of Sequences: 27780
Number of extensions: 291661
Number of successful extensions: 662
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)