Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30707
         (665 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   2.6  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   3.5  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   3.5  
DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex det...    22   6.0  
DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex det...    22   6.0  
DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex det...    22   6.0  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    22   6.0  
DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex det...    22   6.0  
DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex det...    22   6.0  
DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex det...    22   6.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   8.0  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 411 IFCHFLNRYLVLNRYFTLENR 349
           +F H L R LV+ RY T   R
Sbjct: 344 VFIHVLPRLLVMRRYNTPSKR 364


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 353 FSRVKYRFSTKYRFKKWQKIGYSINRSQIAIPNLKVITF 469
           F R+  R    Y   K  +  Y  N+ +I  PNLK+ +F
Sbjct: 418 FYRIYKRIIDYYHSYKMHQKPY--NKDEIIYPNLKIESF 454


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 353 FSRVKYRFSTKYRFKKWQKIGYSINRSQIAIPNLKVITF 469
           F R+  R    Y   K  +  Y  N+ +I  PNLK+ +F
Sbjct: 418 FYRIYKRIIDYYHSYKMHQKPY--NKDEIIYPNLKIESF 454


>DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/66 (15%), Positives = 26/66 (39%)
 Frame = +2

Query: 329 KTEKFECRFSRVKYRFSTKYRFKKWQKIGYSINRSQIAIPNLKVITFAKCLIHSKIFLSP 508
           +TE+  C+  ++    S  Y++  +     + N +   +    +I   +  +   I+   
Sbjct: 70  RTERERCKEPKIISSLSNNYKYSNYNNYNNNYNTNYKKLQYYNIINIEQIPVPVPIYCGN 129

Query: 509 FEVQSM 526
           F  + M
Sbjct: 130 FPPRPM 135


>DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/66 (15%), Positives = 26/66 (39%)
 Frame = +2

Query: 329 KTEKFECRFSRVKYRFSTKYRFKKWQKIGYSINRSQIAIPNLKVITFAKCLIHSKIFLSP 508
           +TE+  C+  ++    S  Y++  +     + N +   +    +I   +  +   I+   
Sbjct: 70  RTERERCKEPKIISSLSNNYKYSNYNNYNNNYNTNYKKLQYYNIINIEQIPVPVPIYCGN 129

Query: 509 FEVQSM 526
           F  + M
Sbjct: 130 FPPRPM 135


>DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/66 (15%), Positives = 26/66 (39%)
 Frame = +2

Query: 329 KTEKFECRFSRVKYRFSTKYRFKKWQKIGYSINRSQIAIPNLKVITFAKCLIHSKIFLSP 508
           +TE+  C+  ++    S  Y++  +     + N +   +    +I   +  +   I+   
Sbjct: 70  RTERERCKEPKIISSLSNNYKYSNYNNYNNNYNTNYKKLQYYNIINIEQIPVPVPIYCGN 129

Query: 509 FEVQSM 526
           F  + M
Sbjct: 130 FPPRPM 135


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/66 (15%), Positives = 26/66 (39%)
 Frame = +2

Query: 329 KTEKFECRFSRVKYRFSTKYRFKKWQKIGYSINRSQIAIPNLKVITFAKCLIHSKIFLSP 508
           +TE+  C+  ++    S  Y++  +     + N +   +    +I   +  +   I+   
Sbjct: 70  RTERERCKEPKIISSLSNNYKYSNYNNYNNNYNTNYKKLQYYNIINIEQIPVPVPIYCGN 129

Query: 509 FEVQSM 526
           F  + M
Sbjct: 130 FPPRPM 135


>DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/66 (15%), Positives = 26/66 (39%)
 Frame = +2

Query: 329 KTEKFECRFSRVKYRFSTKYRFKKWQKIGYSINRSQIAIPNLKVITFAKCLIHSKIFLSP 508
           +TE+  C+  ++    S  Y++  +     + N +   +    +I   +  +   I+   
Sbjct: 70  RTERERCKEPKIISSLSNNYKYSNYNNYNNNYNTNYKKLQYYNIINIEQIPVPVPIYCGN 129

Query: 509 FEVQSM 526
           F  + M
Sbjct: 130 FPPRPM 135


>DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/66 (15%), Positives = 26/66 (39%)
 Frame = +2

Query: 329 KTEKFECRFSRVKYRFSTKYRFKKWQKIGYSINRSQIAIPNLKVITFAKCLIHSKIFLSP 508
           +TE+  C+  ++    S  Y++  +     + N +   +    +I   +  +   I+   
Sbjct: 70  RTERERCKEPKIISSLSNNYKYSNYNNYNNNYNTNYKKLQYYNIINIEQIPVPVPIYCGN 129

Query: 509 FEVQSM 526
           F  + M
Sbjct: 130 FPPRPM 135


>DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/66 (15%), Positives = 26/66 (39%)
 Frame = +2

Query: 329 KTEKFECRFSRVKYRFSTKYRFKKWQKIGYSINRSQIAIPNLKVITFAKCLIHSKIFLSP 508
           +TE+  C+  ++    S  Y++  +     + N +   +    +I   +  +   I+   
Sbjct: 70  RTERERCKEPKIISSLSNNYKYSNYNNYNNNYNTNYKKLQYYNIINIEQIPVPVPIYCGN 129

Query: 509 FEVQSM 526
           F  + M
Sbjct: 130 FPPRPM 135


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -3

Query: 105  IPCETLVHSKVHRLTDHILVELIFDIFYPLLRYR 4
            +   T V+ KV++  D+I+ E     FY    Y+
Sbjct: 932  VDVSTPVNKKVYKQNDYIVDESSSSSFYSSFLYK 965


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,912
Number of Sequences: 438
Number of extensions: 3790
Number of successful extensions: 17
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)