Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30707
         (665 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g22690.1 68418.m02651 disease resistance protein (TIR-NBS-LRR...    29   2.1  
At1g29890.1 68414.m03653 acetyltransferase-related low similarit...    27   8.5  

>At5g22690.1 68418.m02651 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1008

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = -3

Query: 192 ISSILMLYADADFNTSKGILICPDRRTVRIPCETL-VHSKVHRLTDHILVE 43
           IS I +L AD++   + G+    D+  +RI C+T+ +HS +  +   I+ E
Sbjct: 452 ISYIKLLLADSNLGVTIGLKNLVDKSLIRIGCDTVEMHSMLQEMGREIVRE 502


>At1g29890.1 68414.m03653 acetyltransferase-related low similarity
           to O-acetyltransferase [Cryptococcus neoformans var.
           neoformans] GI:17063556
          Length = 470

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
 Frame = -3

Query: 399 FLNRYLVLNRYFTLENRHSNFSVLVKNHKIITN*KFKLCAPRALIFQSKKIRNYIFAIIR 220
           F+ R+L L   F LENR +    + +   I+    F +C   +LI QS+K  NY   +  
Sbjct: 15  FIRRFLTLEDSFLLENR-ATLRAMAEFGAILL--YFYICDRTSLIGQSQK--NYSRDLFL 69

Query: 219 YSVNFTLILISSILML--YADADFNTSKGIL 133
           + +   LI++S++  L  + D    T K IL
Sbjct: 70  F-LFCLLIIVSAMTSLKKHTDKSPITGKSIL 99


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,405,162
Number of Sequences: 28952
Number of extensions: 251185
Number of successful extensions: 562
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1403159472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)