Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30706
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28275| Best HMM Match : REJ (HMM E-Value=0.0012)                    28   5.3  
SB_45927| Best HMM Match : WD40 (HMM E-Value=9e-18)                    28   5.3  
SB_40968| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_6478| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.9  
SB_7209| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.9  

>SB_28275| Best HMM Match : REJ (HMM E-Value=0.0012)
          Length = 1551

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 13/52 (25%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = +1

Query: 40   CGADNVHLTETQKEKAKQYTSECVKESGVS-TEVINAAKTGQNSEDKAFKKF 192
            C   +V +TE+Q  ++K + +E  K  G+S T +I    +  ++ +K++  +
Sbjct: 1110 CSYPSVSITESQANQSKSFPTEYTKAQGISITALIRLNCSATSNTNKSWSLY 1161


>SB_45927| Best HMM Match : WD40 (HMM E-Value=9e-18)
          Length = 1764

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 16/55 (29%), Positives = 31/55 (56%)
 Frame = +1

Query: 112  KESGVSTEVINAAKTGQNSEDKAFKKFVLCFFNKSAILNSDGTLNMDVR*KTSSW 276
            K+    TE++   ++GQN+   A + F+LC  N + + NS   +++D   +T S+
Sbjct: 1176 KQKARFTELLPVGESGQNTVLSAGELFILC--NSAKLENSLHVIDVDTLTETHSF 1228


>SB_40968| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 183

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 251 MCARKLPPGVNKSEAQSVLEQCKDKTG 331
           +C RK   G N+ E +SV ++CK   G
Sbjct: 118 LCQRKTQLGFNECETESVRKRCKSTRG 144


>SB_6478| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 621

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 10/40 (25%), Positives = 22/40 (55%)
 Frame = +1

Query: 52  NVHLTETQKEKAKQYTSECVKESGVSTEVINAAKTGQNSE 171
           N HL     E+   ++ +C+K + + ++ ++  KTG+  E
Sbjct: 253 NAHLVHADSEQDGIFSDKCIKLAHMHSDAVDFPKTGECPE 292


>SB_7209| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 635

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +1

Query: 124 VSTEVINAAKTGQNSEDKAFKKFVL 198
           + T+ I++  TG+NSE+KAF  ++L
Sbjct: 456 IYTQQISSDSTGENSENKAFLLYLL 480


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,237,294
Number of Sequences: 59808
Number of extensions: 254877
Number of successful extensions: 706
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)