Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30706
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g79360.1 68414.m09248 transporter-related low similarity to S...    30   1.1  
At4g38430.1 68417.m05431 expressed protein contains Pfam profile...    28   3.2  
At4g33550.1 68417.m04768 protease inhibitor/seed storage/lipid t...    28   3.2  
At5g45230.1 68418.m05551 disease resistance protein (TIR-NBS-LRR...    27   5.7  
At3g23690.1 68416.m02979 basic helix-loop-helix (bHLH) family pr...    27   5.7  
At2g18110.1 68415.m02105 elongation factor 1-beta, putative / EF...    27   9.9  

>At1g79360.1 68414.m09248 transporter-related low similarity to
           SP|O76082 Organic cation/carnitine transporter 2 (Solute
           carrier family 22, member 5) (High-affinity
           sodium-dependent carnitine cotransporter) {Homo
           sapiens}; contains Pfam profile PF00083: major
           facilitator superfamily protein
          Length = 527

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 391 CLGPFVVALEDLEGFIGCVLPGLILA 314
           C G FV  L +   F+GC++ GL+L+
Sbjct: 107 CAGSFVKGLPESSFFVGCLIGGLVLS 132


>At4g38430.1 68417.m05431 expressed protein contains Pfam profile
           PF03759: Domain of unknown function (DUF315)
          Length = 548

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 248 WMCARKLPPGVNKSEAQSVLEQCKDKTGQ 334
           W+   K+PP     EA+  L+QC+D   Q
Sbjct: 246 WLPCPKVPPNGLSEEARKKLQQCRDFANQ 274


>At4g33550.1 68417.m04768 protease inhibitor/seed storage/lipid
          transfer protein (LTP) family protein contains Pfam
          protease inhibitor/seed storage/LTP family domain
          PF00234
          Length = 115

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +1

Query: 10 LICLAFAVFNCGADNVHLTETQ 75
          L+ LA A+F  G+DNVH+ + Q
Sbjct: 9  LVILAIALFMIGSDNVHVAKAQ 30


>At5g45230.1 68418.m05551 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1231

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -3

Query: 250 PCSVYHLSSRLRIC 209
           PCS++HLSS  R+C
Sbjct: 835 PCSIFHLSSLRRLC 848


>At3g23690.1 68416.m02979 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 371

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = +1

Query: 46  ADNVHLTETQKEKAKQYTSECVKESGVSTEVI--NAAKTGQNSEDKAFKK 189
           +D VH T++   K K   S   KES  S+ +   N+  +G+N   K  K+
Sbjct: 104 SDRVHTTKSNSRKRKSIPSGNGKESPASSSLTASNSKVSGENGGSKGGKR 153


>At2g18110.1 68415.m02105 elongation factor 1-beta, putative /
           EF-1-beta, putative nearly identical to eEF-1beta
           [Arabidopsis thaliana] GI:398606
          Length = 231

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -1

Query: 327 VLSLHCSSTLWASDLLTPGGSFLAHIHVQCTI 232
           V S+      W +  L P G  +  +H+ CTI
Sbjct: 165 VRSIQMEGLFWGASKLVPVGYGIKKLHIMCTI 196


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,018,711
Number of Sequences: 28952
Number of extensions: 185765
Number of successful extensions: 527
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)