Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30703
         (662 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0897 - 22362136-22363698                                         30   1.9  
02_05_0246 + 27136590-27138610,27138933-27139056,27139401-271396...    30   1.9  
12_02_1250 - 27337435-27338817                                         29   4.4  
09_04_0254 + 16131779-16132475,16132609-16132768,16132944-161329...    29   4.4  
03_02_0578 + 9603118-9605633,9605766-9605781                           29   4.4  
03_02_0144 + 5910246-5910734                                           28   5.8  
04_03_0752 + 19300584-19301273,19301335-19301723,19302861-19303539     28   7.6  

>08_02_0897 - 22362136-22363698
          Length = 520

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = -2

Query: 652 HSRPRHQRGARFVERD-VTVRTDTSDEQMHSASLLYEFLKALTLEH*IGALPSSTCALLG 476
           HS  R + G  FV RD V V  D +D+      L    +KA T +   G   SS+  +  
Sbjct: 268 HSERRRREGEAFVARDMVDVLMDLADDPSLEIKLGRVGVKAFTQDLIAGGTESSSVTVEW 327

Query: 475 SMSMCLKN 452
           ++S   KN
Sbjct: 328 ALSELFKN 335


>02_05_0246 +
           27136590-27138610,27138933-27139056,27139401-27139694,
           27139776-27139978,27140307-27140589
          Length = 974

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
 Frame = -3

Query: 339 TLSTVCTCRGASHRWAGPARSVFPDPERMRDP----LENESGGPVGNDAG 202
           T ST  T RGAS  W+    S    P+  RD      +N+ GG  G+D G
Sbjct: 76  TDSTASTPRGASRTWSSWTNSPRSPPKVRRDGSVEFWKNDGGGDGGSDGG 125


>12_02_1250 - 27337435-27338817
          Length = 460

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +1

Query: 508 LRFSARVSTL*ETHTGGWRSAFVHRRYRSGPSHRVQRTGL 627
           +R+  R   L  T  G +R     R+YRSG  H    TGL
Sbjct: 85  VRYGLRADNLTHTANGTFRRYSFGRKYRSGFIHHATLTGL 124


>09_04_0254 +
           16131779-16132475,16132609-16132768,16132944-16132992,
           16133158-16133271,16133434-16133958,16135538-16135969,
           16138882-16138956,16139530-16139625,16140610-16140725,
           16140822-16140992,16141080-16141239,16141328-16141513,
           16141624-16141752,16141837-16141915,16142034-16142143
          Length = 1032

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -2

Query: 646 RPRHQRGARFVERDVTVRTDTSDEQMHSASLLYEFLKA 533
           R  H+R A ++  D T  TDTSD + ++ +   EF  A
Sbjct: 13  RSGHRRIADYLADDQTTNTDTSDNESYTTAYGDEFFAA 50


>03_02_0578 + 9603118-9605633,9605766-9605781
          Length = 843

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 225 RQIRSPADHAFAPGPGRHFV 284
           R   +PA++AF+  PGRHFV
Sbjct: 89  RVFTAPANYAFSAKPGRHFV 108


>03_02_0144 + 5910246-5910734
          Length = 162

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 300 RWAGPARSVFPDPERMRDPLENESGGPV 217
           RW    R+  P P+R    +EN+ G P+
Sbjct: 105 RWGAKIRTPTPSPDRTTSEVENKDGDPL 132


>04_03_0752 + 19300584-19301273,19301335-19301723,19302861-19303539
          Length = 585

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 297 WAGPARSVFPDPERMRDPLENESGG 223
           W  P  +V P P++ + P E ++GG
Sbjct: 544 WLAPVHAVPPPPQQQQQPEEGQAGG 568


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,490,659
Number of Sequences: 37544
Number of extensions: 413923
Number of successful extensions: 1191
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1191
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)