Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30703
(662 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_14153| Best HMM Match : No HMM Matches (HMM E-Value=.) 126 2e-29
SB_16349| Best HMM Match : Glucosamine_iso (HMM E-Value=0.14) 49 3e-06
SB_25563| Best HMM Match : HEAT (HMM E-Value=2.5e-20) 29 2.6
SB_21211| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_45087| Best HMM Match : HEAT (HMM E-Value=1e-08) 29 4.5
SB_23055| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_49633| Best HMM Match : FAD_binding_7 (HMM E-Value=0) 28 5.9
SB_48023| Best HMM Match : Sulfotransfer_1 (HMM E-Value=2.4e-07) 28 5.9
SB_48157| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.8
SB_19899| Best HMM Match : rve (HMM E-Value=3.9e-22) 28 7.8
SB_12637| Best HMM Match : rve (HMM E-Value=3.7e-22) 28 7.8
SB_49811| Best HMM Match : rve (HMM E-Value=4.4e-22) 28 7.8
SB_37480| Best HMM Match : rve (HMM E-Value=4.7e-22) 28 7.8
SB_35274| Best HMM Match : rve (HMM E-Value=7.2e-21) 28 7.8
>SB_14153| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 293
Score = 126 bits (303), Expect = 2e-29
Identities = 56/86 (65%), Positives = 64/86 (74%), Gaps = 3/86 (3%)
Frame = +3
Query: 261 PGPGRHFVXXXXXXXXXXX---MYKRLIEFHKEGKLSFKYVTTFNMDEYVGLPRDHPESY 431
PGP +FV MY++LIEF+K G+LSFKYV TFNMDEYVGLP+DHPESY
Sbjct: 29 PGPDNYFVLGLPTGKCGGTPLGMYRKLIEFYKRGELSFKYVKTFNMDEYVGLPKDHPESY 88
Query: 432 HYYMWNEFFKHIDIEPSNAHVLDGNA 509
H YMW+ FFKHIDI P NAH+LDGNA
Sbjct: 89 HSYMWDNFFKHIDILPENAHILDGNA 114
Score = 82.6 bits (195), Expect = 3e-16
Identities = 37/51 (72%), Positives = 44/51 (86%)
Frame = +2
Query: 509 SDLVLECQRFEKLIQEAGGVHLFIGGIGPDRHIAFNEPGSSLVSRTRVKTL 661
+DLV EC +FE+ I+ AGGV +F+GGIGPD HIAFNEPGSSL SRTRVK+L
Sbjct: 115 ADLVQECNQFEEKIKAAGGVDVFVGGIGPDGHIAFNEPGSSLASRTRVKSL 165
>SB_16349| Best HMM Match : Glucosamine_iso (HMM E-Value=0.14)
Length = 62
Score = 49.2 bits (112), Expect = 3e-06
Identities = 22/25 (88%), Positives = 23/25 (92%)
Frame = +2
Query: 587 IGPDRHIAFNEPGSSLVSRTRVKTL 661
IGPD HIAFNEPGSSL SRTRVK+L
Sbjct: 2 IGPDGHIAFNEPGSSLASRTRVKSL 26
>SB_25563| Best HMM Match : HEAT (HMM E-Value=2.5e-20)
Length = 1803
Score = 29.5 bits (63), Expect = 2.6
Identities = 31/116 (26%), Positives = 47/116 (40%), Gaps = 3/116 (2%)
Frame = -1
Query: 389 HVESGHIFER*LPFLVELYQ---PFVHAEGRPTGGQAQHEVSSRTRSECVIRWRTNLAAQ 219
HV I ER LP+++ L P V A+G T Q H V + RS+ I L +
Sbjct: 282 HVSDDVILERLLPYMLFLVNDPLPQVRAQGLKTLTQCLHLVRNIPRSDANIFPEYILPSL 341
Query: 218 SATMLAYSRIIRRIVRDYFHTLAVTISYYGEYERIPLLEKQKTTA*NDFSLSYEES 51
S I+R + +LA T + E ++ T +D + Y+ S
Sbjct: 342 SWLTQDAEVIVRIAYAESIASLAETALKFLEMAQLDYANASMETQVDDAPIQYQGS 397
>SB_21211| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 428
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +2
Query: 104 QEVESVRILRNKILSPLTCESNPE 175
QE+++VR +NK LS L CES E
Sbjct: 72 QELQNVRDRKNKTLSQLLCESREE 95
>SB_45087| Best HMM Match : HEAT (HMM E-Value=1e-08)
Length = 149
Score = 28.7 bits (61), Expect = 4.5
Identities = 30/114 (26%), Positives = 46/114 (40%), Gaps = 3/114 (2%)
Frame = -1
Query: 389 HVESGHIFER*LPFLVELYQ---PFVHAEGRPTGGQAQHEVSSRTRSECVIRWRTNLAAQ 219
HV I ER LP+++ L P V A+G T Q H V + RS+ I L +
Sbjct: 36 HVSDDVILERLLPYMLFLVNDPLPQVRAQGLKTLTQCLHLVRNIPRSDANIFPEYILPSL 95
Query: 218 SATMLAYSRIIRRIVRDYFHTLAVTISYYGEYERIPLLEKQKTTA*NDFSLSYE 57
S I+R + +LA T + E ++ T +D + Y+
Sbjct: 96 SWLTQDAEVIVRIAYAESIASLAETALKFLEMAQLDYANASMETQVDDAPIQYQ 149
>SB_23055| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 377
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -2
Query: 316 PRG-VPPVGRPSTKCLPGPGANA*SAGERIWRPSRQR 209
PRG + P+G P T +PG A S GER P R R
Sbjct: 195 PRGPMGPIGPPGTPGVPGQPGKAGSPGER-GPPGRDR 230
>SB_49633| Best HMM Match : FAD_binding_7 (HMM E-Value=0)
Length = 1291
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = +2
Query: 302 WDAPRHVQTVDRVPQGREVIFQICDHFQHGRVC 400
W AP VQ R G + +CDH RVC
Sbjct: 669 WKAPLDVQIKARCVVGDDYPEPVCDHLLQRRVC 701
>SB_48023| Best HMM Match : Sulfotransfer_1 (HMM E-Value=2.4e-07)
Length = 417
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -1
Query: 302 TGGQAQHEVSSRTRSECVIRWRTNL 228
+G AQ E SSR SE V +WR +
Sbjct: 354 SGSSAQPETSSRNLSESVYKWRLRM 378
>SB_48157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1306
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -1
Query: 248 IRWRTNLAAQSATMLAYSRIIRRIVRDYFHTLAVTISYYGEYERI 114
IRW+ NL+ Y R+IR I + + T+ + +Y + E +
Sbjct: 1113 IRWQFNLSRSPWWGGMYERLIREIKKTLYKTMGRSSLHYEQMEEV 1157
>SB_19899| Best HMM Match : rve (HMM E-Value=3.9e-22)
Length = 574
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -1
Query: 248 IRWRTNLAAQSATMLAYSRIIRRIVRDYFHTLAVTISYYGEYERI 114
IRW+ NL+ Y R+IR I + + T+ + +Y + E +
Sbjct: 340 IRWQFNLSRSPWWGGMYERLIREIKKTLYKTMGRSSLHYEQMEEV 384
>SB_12637| Best HMM Match : rve (HMM E-Value=3.7e-22)
Length = 1072
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -1
Query: 248 IRWRTNLAAQSATMLAYSRIIRRIVRDYFHTLAVTISYYGEYERI 114
IRW+ NL+ Y R+IR I + + T+ + +Y + E +
Sbjct: 942 IRWQFNLSRSPWWGGMYERLIREIKKTLYKTMGRSSLHYEQMEEV 986
>SB_49811| Best HMM Match : rve (HMM E-Value=4.4e-22)
Length = 664
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -1
Query: 248 IRWRTNLAAQSATMLAYSRIIRRIVRDYFHTLAVTISYYGEYERI 114
IRW+ NL+ Y R+IR I + + T+ + +Y + E +
Sbjct: 430 IRWQFNLSRSPWWGGMYERLIREIKKTLYKTMGRSSLHYEQMEEV 474
>SB_37480| Best HMM Match : rve (HMM E-Value=4.7e-22)
Length = 900
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -1
Query: 248 IRWRTNLAAQSATMLAYSRIIRRIVRDYFHTLAVTISYYGEYERI 114
IRW+ NL+ Y R+IR I + + T+ + +Y + E +
Sbjct: 243 IRWQFNLSRSPWWGGMYERLIREIKKTLYKTMGRSSLHYEQMEEV 287
>SB_35274| Best HMM Match : rve (HMM E-Value=7.2e-21)
Length = 803
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -1
Query: 248 IRWRTNLAAQSATMLAYSRIIRRIVRDYFHTLAVTISYYGEYERI 114
IRW+ NL+ Y R+IR I + + T+ + +Y + E +
Sbjct: 673 IRWQFNLSRSPWWGGMYERLIREIKKTLYKTMGRSSLHYEQMEEV 717
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,977,111
Number of Sequences: 59808
Number of extensions: 451868
Number of successful extensions: 1048
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1048
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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