BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30703 (662 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g13380.1 68418.m01541 auxin-responsive GH3 family protein sim... 29 2.8 At5g13370.1 68418.m01540 auxin-responsive GH3 family protein sim... 29 2.8 At4g01610.2 68417.m00211 cathepsin B-like cysteine protease, put... 28 4.8 At4g01610.1 68417.m00210 cathepsin B-like cysteine protease, put... 28 4.8 At5g18570.1 68418.m02195 GTP1/OBG family protein similar to SP|P... 28 6.4 At2g38150.1 68415.m04683 alpha 1,4-glycosyltransferase family pr... 28 6.4 >At5g13380.1 68418.m01541 auxin-responsive GH3 family protein similar to auxin-responsive GH3 product [Glycine max] GI:18591; contains Pfam profile PF03321: GH3 auxin-responsive promoter Length = 624 Score = 29.1 bits (62), Expect = 2.8 Identities = 12/26 (46%), Positives = 19/26 (73%) Frame = -2 Query: 409 GRPTYSSMLKVVTYLKDNFPSLWNSI 332 G P SS LKV+ +L+D++P L ++I Sbjct: 246 GAPYASSFLKVIKFLEDHWPELCSNI 271 >At5g13370.1 68418.m01540 auxin-responsive GH3 family protein similar to auxin-responsive GH3 product [Glycine max] GI:18591; contains Pfam profile PF03321: GH3 auxin-responsive promoter Length = 595 Score = 29.1 bits (62), Expect = 2.8 Identities = 12/26 (46%), Positives = 19/26 (73%) Frame = -2 Query: 409 GRPTYSSMLKVVTYLKDNFPSLWNSI 332 G P SS LKV+ +L+D++P L ++I Sbjct: 216 GAPFASSFLKVIKFLEDHWPELCSNI 241 >At4g01610.2 68417.m00211 cathepsin B-like cysteine protease, putative similar to cathepsin B-like cysteine proteinase GI:609175 from [Nicotiana rustica]; contains an unusually short, 5nt exon Length = 359 Score = 28.3 bits (60), Expect = 4.8 Identities = 10/29 (34%), Positives = 18/29 (62%) Frame = -3 Query: 225 GPVGNDAGIFENYKTHSSGLLSHVSGDNI 139 GPV ++E++ + SG+ H++G NI Sbjct: 255 GPVEVSFTVYEDFAHYKSGVYKHITGSNI 283 >At4g01610.1 68417.m00210 cathepsin B-like cysteine protease, putative similar to cathepsin B-like cysteine proteinase GI:609175 from [Nicotiana rustica]; contains an unusually short, 5nt exon Length = 359 Score = 28.3 bits (60), Expect = 4.8 Identities = 10/29 (34%), Positives = 18/29 (62%) Frame = -3 Query: 225 GPVGNDAGIFENYKTHSSGLLSHVSGDNI 139 GPV ++E++ + SG+ H++G NI Sbjct: 255 GPVEVSFTVYEDFAHYKSGVYKHITGSNI 283 >At5g18570.1 68418.m02195 GTP1/OBG family protein similar to SP|P20964 Spo0B-associated GTP-binding protein {Bacillus subtilis}; contains Pfam profile PF01018: GTP1/OBG family Length = 681 Score = 27.9 bits (59), Expect = 6.4 Identities = 16/54 (29%), Positives = 28/54 (51%) Frame = +3 Query: 351 GKLSFKYVTTFNMDEYVGLPRDHPESYHYYMWNEFFKHIDIEPSNAHVLDGNAP 512 G +SF Y +T + + GL + + +EF +H + + HV+DG+AP Sbjct: 418 GVVSFDYDSTMVVADLPGLLEGAHRGFG--LGHEFLRHTERCSALVHVVDGSAP 469 >At2g38150.1 68415.m04683 alpha 1,4-glycosyltransferase family protein / glycosyltransferase sugar-binding DXD motif-containing protein low similarity to alpha-1,4-N-acetylglucosaminyltransferase, Homo sapiens [gi:5726306], Gb3 synthase, Rattus norvegicus [gi:9082162] ; contains Pfam profiles PF04572: Alpha 1,4-glycosyltransferase conserved region, PF04488: Glycosyltransferase sugar-binding region containing DXD motif Length = 736 Score = 27.9 bits (59), Expect = 6.4 Identities = 10/30 (33%), Positives = 17/30 (56%) Frame = +3 Query: 423 ESYHYYMWNEFFKHIDIEPSNAHVLDGNAP 512 ESY ++WN+ + + IE + + D N P Sbjct: 339 ESYGLHLWNKITRKLKIESPKSTLYDNNLP 368 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,391,958 Number of Sequences: 28952 Number of extensions: 311973 Number of successful extensions: 832 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 807 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 832 length of database: 12,070,560 effective HSP length: 78 effective length of database: 9,812,304 effective search space used: 1393347168 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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