Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30703
         (662 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g13380.1 68418.m01541 auxin-responsive GH3 family protein sim...    29   2.8  
At5g13370.1 68418.m01540 auxin-responsive GH3 family protein sim...    29   2.8  
At4g01610.2 68417.m00211 cathepsin B-like cysteine protease, put...    28   4.8  
At4g01610.1 68417.m00210 cathepsin B-like cysteine protease, put...    28   4.8  
At5g18570.1 68418.m02195 GTP1/OBG family protein similar to SP|P...    28   6.4  
At2g38150.1 68415.m04683 alpha 1,4-glycosyltransferase family pr...    28   6.4  

>At5g13380.1 68418.m01541 auxin-responsive GH3 family protein
           similar to auxin-responsive GH3 product [Glycine max]
           GI:18591; contains Pfam profile PF03321: GH3
           auxin-responsive promoter
          Length = 624

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = -2

Query: 409 GRPTYSSMLKVVTYLKDNFPSLWNSI 332
           G P  SS LKV+ +L+D++P L ++I
Sbjct: 246 GAPYASSFLKVIKFLEDHWPELCSNI 271


>At5g13370.1 68418.m01540 auxin-responsive GH3 family protein
           similar to auxin-responsive GH3 product [Glycine max]
           GI:18591; contains Pfam profile PF03321: GH3
           auxin-responsive promoter
          Length = 595

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = -2

Query: 409 GRPTYSSMLKVVTYLKDNFPSLWNSI 332
           G P  SS LKV+ +L+D++P L ++I
Sbjct: 216 GAPFASSFLKVIKFLEDHWPELCSNI 241


>At4g01610.2 68417.m00211 cathepsin B-like cysteine protease,
           putative similar to cathepsin B-like cysteine proteinase
           GI:609175 from [Nicotiana rustica]; contains an
           unusually short, 5nt exon
          Length = 359

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -3

Query: 225 GPVGNDAGIFENYKTHSSGLLSHVSGDNI 139
           GPV     ++E++  + SG+  H++G NI
Sbjct: 255 GPVEVSFTVYEDFAHYKSGVYKHITGSNI 283


>At4g01610.1 68417.m00210 cathepsin B-like cysteine protease,
           putative similar to cathepsin B-like cysteine proteinase
           GI:609175 from [Nicotiana rustica]; contains an
           unusually short, 5nt exon
          Length = 359

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -3

Query: 225 GPVGNDAGIFENYKTHSSGLLSHVSGDNI 139
           GPV     ++E++  + SG+  H++G NI
Sbjct: 255 GPVEVSFTVYEDFAHYKSGVYKHITGSNI 283


>At5g18570.1 68418.m02195 GTP1/OBG family protein similar to
           SP|P20964 Spo0B-associated GTP-binding protein {Bacillus
           subtilis}; contains Pfam profile PF01018: GTP1/OBG
           family
          Length = 681

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +3

Query: 351 GKLSFKYVTTFNMDEYVGLPRDHPESYHYYMWNEFFKHIDIEPSNAHVLDGNAP 512
           G +SF Y +T  + +  GL       +   + +EF +H +   +  HV+DG+AP
Sbjct: 418 GVVSFDYDSTMVVADLPGLLEGAHRGFG--LGHEFLRHTERCSALVHVVDGSAP 469


>At2g38150.1 68415.m04683 alpha 1,4-glycosyltransferase family
           protein / glycosyltransferase sugar-binding DXD
           motif-containing protein low similarity to
           alpha-1,4-N-acetylglucosaminyltransferase, Homo sapiens
           [gi:5726306], Gb3 synthase, Rattus norvegicus
           [gi:9082162] ; contains Pfam profiles PF04572: Alpha
           1,4-glycosyltransferase conserved region, PF04488:
           Glycosyltransferase sugar-binding region containing DXD
           motif
          Length = 736

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 423 ESYHYYMWNEFFKHIDIEPSNAHVLDGNAP 512
           ESY  ++WN+  + + IE   + + D N P
Sbjct: 339 ESYGLHLWNKITRKLKIESPKSTLYDNNLP 368


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,391,958
Number of Sequences: 28952
Number of extensions: 311973
Number of successful extensions: 832
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)