Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30701
         (529 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0510 + 24420402-24422582                                         31   0.43 
07_01_0733 + 5570084-5570282,5570395-5570600,5572484-5572624,557...    30   1.0  
02_01_0385 + 2783387-2783695,2784149-2785082,2785206-2785309,278...    30   1.0  
03_05_1160 + 30826972-30828375,30828641-30828754,30828901-308290...    28   4.0  
01_06_0542 + 30096277-30096340,30096444-30096529,30096810-300969...    28   4.0  
04_04_0036 - 22307328-22308026                                         27   9.3  
01_05_0597 - 23526705-23526749,23526794-23526905,23527068-235271...    27   9.3  

>11_06_0510 + 24420402-24422582
          Length = 726

 Score = 31.5 bits (68), Expect = 0.43
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -3

Query: 158 D*CFLCSRPSDRSGPGCVSTDRNVRSKC-RCSNVSCSSHYDAQLMRSSSTR 9
           D CF  + P+D+   GC S   +  SKC RC   S S + DA+     S +
Sbjct: 504 DLCFYANHPADKDDDGCCSCSSS--SKCLRCLCSSSSGYPDAEARGRDSNK 552


>07_01_0733 +
           5570084-5570282,5570395-5570600,5572484-5572624,
           5572773-5572949,5573049-5573145,5573575-5573687,
           5573774-5573896,5574004-5574075,5575340-5575432,
           5575564-5575674,5575767-5575889,5576834-5576890,
           5576939-5577022,5577140-5577214,5577418-5577554,
           5577719-5577853,5579029-5579168,5579334-5579399,
           5579732-5579838,5579910-5579990,5580064-5580138,
           5580224-5580325,5581837-5582005,5582090-5582217,
           5582596-5582679,5582779-5582879,5583729-5583882,
           5583964-5584038,5584112-5584262,5584463-5585078,
           5585427-5585487,5585874-5586019,5586104-5586287,
           5586363-5586440,5586603-5586931,5587023-5587199,
           5587571-5587667,5587742-5587897,5587962-5588198,
           5588271-5588354,5588426-5588486,5588762-5588898
          Length = 1912

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
 Frame = +2

Query: 29  LTARHS-VNCRTHLNIDISNAHCGPWRHIQDHSCLRAGC-IKNINHIAWLVPRS*SVALT 202
           L+A+ S +NC + +  +IS  H G   H    + + AGC ++ + H+    P+    A+ 
Sbjct: 725 LSAKQSLINCASDIPSEISQMHAGSVFHGYVCNIIEAGCFVRFLGHLTGFSPK--DKAVD 782

Query: 203 RSALRVRTRRYV 238
           RS  ++    YV
Sbjct: 783 RSVEKLSNAFYV 794


>02_01_0385 +
           2783387-2783695,2784149-2785082,2785206-2785309,
           2785402-2785486,2785517-2787578,2787732-2787753,
           2788157-2788327,2791473-2791517,2792558-2793874,
           2793962-2794012,2794090-2794188,2794352-2794504,
           2794554-2794571
          Length = 1789

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -1

Query: 427 TTKIHIHENLYAHAKHNARAREVRRDYENF 338
           T K+H+H+ ++  A+H A  R  +RD  NF
Sbjct: 460 TLKLHMHDMVHELARHVAENRNTKRDNLNF 489


>03_05_1160 +
           30826972-30828375,30828641-30828754,30828901-30829032,
           30830087-30830224
          Length = 595

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
 Frame = -3

Query: 146 LCSRPSDRSGPGCVSTDRNVRSKCRCSNVS--CSSHYDAQLMRS--SSTREP 3
           +C  P + S  G ++ D  + S+C CS  S   S+H DA    S  SS + P
Sbjct: 347 MCPEPDNGSLDGRLTEDPPLSSRCDCSKQSEKKSAHLDANCCASAASSNKNP 398


>01_06_0542 +
           30096277-30096340,30096444-30096529,30096810-30096934,
           30097405-30097513,30097865-30097981,30098066-30098149,
           30098795-30098914,30099416-30099502,30100160-30100237
          Length = 289

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 17/37 (45%), Positives = 20/37 (54%)
 Frame = +2

Query: 107 HIQDHSCLRAGCIKNINHIAWLVPRS*SVALTRSALR 217
           HI   S L  G + N+N IA  VPR   VA  R+ LR
Sbjct: 183 HIGSFSFLGGGSVFNLNQIAQDVPRYMMVAGDRAELR 219


>04_04_0036 - 22307328-22308026
          Length = 232

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
 Frame = -3

Query: 137 RPSDRSGPGCVSTDRNVR--SKCRCSNVSCSSHYD 39
           RP  R G    + +R V+    CRC+   C  HYD
Sbjct: 113 RPLPRHGTTETAAERQVQRGGPCRCACNYCGGHYD 147


>01_05_0597 -
           23526705-23526749,23526794-23526905,23527068-23527134,
           23527439-23527566,23527638-23527750,23527827-23527972,
           23528419-23528525,23528667-23528873,23530878-23531129,
           23531324-23531406
          Length = 419

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = -3

Query: 125 RSGPGCVSTDRNVRSKCRCSNVSCSSHYDAQLMR 24
           R GP    T   VR +CR    +CS   DA L R
Sbjct: 7   RGGPRRSVTTEEVRGECRGGGSTCSCAADALLWR 40


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,683,301
Number of Sequences: 37544
Number of extensions: 215266
Number of successful extensions: 642
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)