BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30701 (529 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_29012| Best HMM Match : Avirulence (HMM E-Value=1.1) 32 0.34 SB_56469| Best HMM Match : Exo_endo_phos (HMM E-Value=1.2e-12) 29 1.8 SB_22988| Best HMM Match : RVT_1 (HMM E-Value=5.70328e-43) 29 1.8 SB_21614| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-41) 29 1.8 SB_10952| Best HMM Match : Exo_endo_phos (HMM E-Value=4.1e-08) 29 1.8 SB_57427| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00044) 29 1.8 SB_48325| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8 SB_33083| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8 SB_10116| Best HMM Match : RVT_1 (HMM E-Value=2.5e-33) 29 1.8 SB_3348| Best HMM Match : Borrelia_orfA (HMM E-Value=0.71) 29 1.8 SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1 SB_49656| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1 SB_37790| Best HMM Match : HAT (HMM E-Value=0.17) 28 4.1 SB_30084| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1 SB_26469| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5 SB_5142| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5 SB_5689| Best HMM Match : Ribosomal_L34e (HMM E-Value=0.34) 27 7.2 SB_8360| Best HMM Match : RVT_1 (HMM E-Value=3.6e-07) 27 9.6 >SB_29012| Best HMM Match : Avirulence (HMM E-Value=1.1) Length = 444 Score = 31.9 bits (69), Expect = 0.34 Identities = 15/38 (39%), Positives = 21/38 (55%) Frame = +1 Query: 85 RTLRSVETHPGPLLSEGRLHKKH*SHCVARAALVIRRV 198 +T+R V+T P L + RLH H +HC L +R V Sbjct: 370 QTVRIVQTPPDRLCALYRLHHTHSAHCTDTTRLTVRTV 407 Score = 29.1 bits (62), Expect = 2.4 Identities = 14/38 (36%), Positives = 20/38 (52%) Frame = +1 Query: 85 RTLRSVETHPGPLLSEGRLHKKH*SHCVARAALVIRRV 198 +TLR V+T P L + R H+ H +HC +R V Sbjct: 210 QTLRIVQTPPDRLCALYRFHQTHCAHCTDFTRQTVRTV 247 >SB_56469| Best HMM Match : Exo_endo_phos (HMM E-Value=1.2e-12) Length = 652 Score = 29.5 bits (63), Expect = 1.8 Identities = 14/57 (24%), Positives = 26/57 (45%) Frame = +1 Query: 280 NRVSLARLSDGSKNVLLLFQNFHNHVEPLWRARYV*RARTGSRVYEFLSSWFRYSVV 450 N + + +DGSKNV +FQ+F +++ + R RT + W ++ Sbjct: 544 NWIDVLPSNDGSKNVNDIFQSFFSNISAIIDKHVPLRKRTRKEIKSLSKPWITKGII 600 >SB_22988| Best HMM Match : RVT_1 (HMM E-Value=5.70328e-43) Length = 1029 Score = 29.5 bits (63), Expect = 1.8 Identities = 14/57 (24%), Positives = 26/57 (45%) Frame = +1 Query: 280 NRVSLARLSDGSKNVLLLFQNFHNHVEPLWRARYV*RARTGSRVYEFLSSWFRYSVV 450 N + + +DGSKNV +FQ+F +++ + R RT + W ++ Sbjct: 451 NWIDVLPSNDGSKNVNDIFQSFFSNISAIIDKHVPLRKRTRKEIKSLSKPWITKGII 507 >SB_21614| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-41) Length = 1047 Score = 29.5 bits (63), Expect = 1.8 Identities = 14/57 (24%), Positives = 26/57 (45%) Frame = +1 Query: 280 NRVSLARLSDGSKNVLLLFQNFHNHVEPLWRARYV*RARTGSRVYEFLSSWFRYSVV 450 N + + +DGSKNV +FQ+F +++ + R RT + W ++ Sbjct: 550 NWIDVLPSNDGSKNVNDIFQSFFSNISAIIDKHVPLRKRTRKEIKSLSKPWITKGII 606 >SB_10952| Best HMM Match : Exo_endo_phos (HMM E-Value=4.1e-08) Length = 558 Score = 29.5 bits (63), Expect = 1.8 Identities = 14/57 (24%), Positives = 26/57 (45%) Frame = +1 Query: 280 NRVSLARLSDGSKNVLLLFQNFHNHVEPLWRARYV*RARTGSRVYEFLSSWFRYSVV 450 N + + +DGSKNV +FQ+F +++ + R RT + W ++ Sbjct: 296 NWIDVLPSNDGSKNVNDIFQSFFSNISAIIDKHVPLRKRTRKEIKSLSKPWITKGII 352 >SB_57427| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00044) Length = 1693 Score = 29.5 bits (63), Expect = 1.8 Identities = 14/57 (24%), Positives = 26/57 (45%) Frame = +1 Query: 280 NRVSLARLSDGSKNVLLLFQNFHNHVEPLWRARYV*RARTGSRVYEFLSSWFRYSVV 450 N + + +DGSKNV +FQ+F +++ + R RT + W ++ Sbjct: 1329 NWIDVLPSNDGSKNVNDIFQSFFSNISAIIDKHVPLRKRTRKEIKSLSKPWITKGII 1385 >SB_48325| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 872 Score = 29.5 bits (63), Expect = 1.8 Identities = 14/57 (24%), Positives = 26/57 (45%) Frame = +1 Query: 280 NRVSLARLSDGSKNVLLLFQNFHNHVEPLWRARYV*RARTGSRVYEFLSSWFRYSVV 450 N + + +DGSKNV +FQ+F +++ + R RT + W ++ Sbjct: 400 NWIDVLPSNDGSKNVNDIFQSFFSNISAIIDKHVPLRKRTRKEIKSLSKPWITKGII 456 >SB_33083| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 413 Score = 29.5 bits (63), Expect = 1.8 Identities = 14/57 (24%), Positives = 26/57 (45%) Frame = +1 Query: 280 NRVSLARLSDGSKNVLLLFQNFHNHVEPLWRARYV*RARTGSRVYEFLSSWFRYSVV 450 N + + +DGSKNV +FQ+F +++ + R RT + W ++ Sbjct: 203 NWIDVLPSNDGSKNVNDIFQSFFSNISAIIDKHVPLRKRTRKEIKSLSKPWITKGII 259 >SB_10116| Best HMM Match : RVT_1 (HMM E-Value=2.5e-33) Length = 759 Score = 29.5 bits (63), Expect = 1.8 Identities = 14/57 (24%), Positives = 26/57 (45%) Frame = +1 Query: 280 NRVSLARLSDGSKNVLLLFQNFHNHVEPLWRARYV*RARTGSRVYEFLSSWFRYSVV 450 N + + +DGSKNV +FQ+F +++ + R RT + W ++ Sbjct: 276 NWIDVLPSNDGSKNVNDIFQSFFSNISAIIDKHVPLRKRTRKEIKSLSKPWITKGII 332 >SB_3348| Best HMM Match : Borrelia_orfA (HMM E-Value=0.71) Length = 500 Score = 29.5 bits (63), Expect = 1.8 Identities = 14/57 (24%), Positives = 26/57 (45%) Frame = +1 Query: 280 NRVSLARLSDGSKNVLLLFQNFHNHVEPLWRARYV*RARTGSRVYEFLSSWFRYSVV 450 N + + +DGSKNV +FQ+F +++ + R RT + W ++ Sbjct: 102 NWIDVLPSNDGSKNVNDIFQSFFSNISAIIDKHVPLRKRTRKEIKSLSKPWITKGII 158 >SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 337 Score = 28.3 bits (60), Expect = 4.1 Identities = 18/56 (32%), Positives = 28/56 (50%) Frame = -1 Query: 199 QRDGSRARHEPRNVINVFYAAGPQTGVVLDVSPRTAMCVRNVDVQMCPAVHTMTRS 32 Q G R E R + F QT ++L P++A+CV+ D + A+HT R+ Sbjct: 156 QSSGMRRLEEERVL---FLETDTQTDMLLG-KPKSAICVQRFDDSLNSAIHTTYRT 207 >SB_49656| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 292 Score = 28.3 bits (60), Expect = 4.1 Identities = 18/56 (32%), Positives = 28/56 (50%) Frame = -1 Query: 199 QRDGSRARHEPRNVINVFYAAGPQTGVVLDVSPRTAMCVRNVDVQMCPAVHTMTRS 32 Q G R E R + F QT ++L P++A+CV+ D + A+HT R+ Sbjct: 65 QSSGMRRLEEERVL---FLETDTQTDMLLG-KPKSAICVQRFDDSLNSAIHTTYRT 116 >SB_37790| Best HMM Match : HAT (HMM E-Value=0.17) Length = 498 Score = 28.3 bits (60), Expect = 4.1 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = +2 Query: 65 LNIDISNAHCGPWRHIQDHSCLRAGCIKN 151 L +D+ NA GPW I+ H C + C+ N Sbjct: 287 LKLDMGNA--GPWGDIKIHPCDKPKCLTN 313 >SB_30084| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 135 Score = 28.3 bits (60), Expect = 4.1 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%) Frame = +1 Query: 262 PKTTITNRVSLARLSDGSKNVLLLFQNFHNHVEPLWRARYV*RARTG-SRVYEFLSS 429 P + + N L DG ++ + N VEPLW +V A+ +V +F+ S Sbjct: 17 PNSPVQNGTLKQSLEDGKDHMSTCYDWSRNEVEPLWLYEHVEAAKWSIDQVADFIRS 73 >SB_26469| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 95 Score = 27.9 bits (59), Expect = 5.5 Identities = 18/55 (32%), Positives = 27/55 (49%) Frame = -1 Query: 199 QRDGSRARHEPRNVINVFYAAGPQTGVVLDVSPRTAMCVRNVDVQMCPAVHTMTR 35 Q G R E R + F QT ++L P++A+CV+ D + A+HT R Sbjct: 24 QSSGMRRLEEERVL---FLETDTQTDMLLG-KPKSAICVQRFDDSLNSAIHTTYR 74 >SB_5142| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 65 Score = 27.9 bits (59), Expect = 5.5 Identities = 9/19 (47%), Positives = 12/19 (63%) Frame = +2 Query: 98 PWRHIQDHSCLRAGCIKNI 154 PWR+ DH CL+ I N+ Sbjct: 5 PWRNAADHHCLKTAIIFNV 23 >SB_5689| Best HMM Match : Ribosomal_L34e (HMM E-Value=0.34) Length = 524 Score = 27.5 bits (58), Expect = 7.2 Identities = 12/38 (31%), Positives = 20/38 (52%) Frame = +1 Query: 85 RTLRSVETHPGPLLSEGRLHKKH*SHCVARAALVIRRV 198 +T+R+V+T P L + R H+ +HC +R V Sbjct: 365 QTVRTVQTSPDRLCALYRFHQTDCAHCTVTTRQTVRSV 402 >SB_8360| Best HMM Match : RVT_1 (HMM E-Value=3.6e-07) Length = 468 Score = 27.1 bits (57), Expect = 9.6 Identities = 13/57 (22%), Positives = 25/57 (43%) Frame = +1 Query: 280 NRVSLARLSDGSKNVLLLFQNFHNHVEPLWRARYV*RARTGSRVYEFLSSWFRYSVV 450 N + + +DG KNV +FQ+F +++ + R RT + W ++ Sbjct: 6 NWIDVLPSNDGLKNVNDIFQSFFSNISAIIDKHVPLRKRTRKEIKSLSKPWITKGII 62 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,267,624 Number of Sequences: 59808 Number of extensions: 270259 Number of successful extensions: 915 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 811 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 915 length of database: 16,821,457 effective HSP length: 77 effective length of database: 12,216,241 effective search space used: 1197191618 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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