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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30701
         (529 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29012| Best HMM Match : Avirulence (HMM E-Value=1.1)                32   0.34 
SB_56469| Best HMM Match : Exo_endo_phos (HMM E-Value=1.2e-12)         29   1.8  
SB_22988| Best HMM Match : RVT_1 (HMM E-Value=5.70328e-43)             29   1.8  
SB_21614| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-41)             29   1.8  
SB_10952| Best HMM Match : Exo_endo_phos (HMM E-Value=4.1e-08)         29   1.8  
SB_57427| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00044)         29   1.8  
SB_48325| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.8  
SB_33083| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.8  
SB_10116| Best HMM Match : RVT_1 (HMM E-Value=2.5e-33)                 29   1.8  
SB_3348| Best HMM Match : Borrelia_orfA (HMM E-Value=0.71)             29   1.8  
SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_49656| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_37790| Best HMM Match : HAT (HMM E-Value=0.17)                      28   4.1  
SB_30084| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_26469| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.5  
SB_5142| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.5  
SB_5689| Best HMM Match : Ribosomal_L34e (HMM E-Value=0.34)            27   7.2  
SB_8360| Best HMM Match : RVT_1 (HMM E-Value=3.6e-07)                  27   9.6  

>SB_29012| Best HMM Match : Avirulence (HMM E-Value=1.1)
          Length = 444

 Score = 31.9 bits (69), Expect = 0.34
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +1

Query: 85  RTLRSVETHPGPLLSEGRLHKKH*SHCVARAALVIRRV 198
           +T+R V+T P  L +  RLH  H +HC     L +R V
Sbjct: 370 QTVRIVQTPPDRLCALYRLHHTHSAHCTDTTRLTVRTV 407



 Score = 29.1 bits (62), Expect = 2.4
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 85  RTLRSVETHPGPLLSEGRLHKKH*SHCVARAALVIRRV 198
           +TLR V+T P  L +  R H+ H +HC       +R V
Sbjct: 210 QTLRIVQTPPDRLCALYRFHQTHCAHCTDFTRQTVRTV 247


>SB_56469| Best HMM Match : Exo_endo_phos (HMM E-Value=1.2e-12)
          Length = 652

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 14/57 (24%), Positives = 26/57 (45%)
 Frame = +1

Query: 280 NRVSLARLSDGSKNVLLLFQNFHNHVEPLWRARYV*RARTGSRVYEFLSSWFRYSVV 450
           N + +   +DGSKNV  +FQ+F +++  +       R RT   +      W    ++
Sbjct: 544 NWIDVLPSNDGSKNVNDIFQSFFSNISAIIDKHVPLRKRTRKEIKSLSKPWITKGII 600


>SB_22988| Best HMM Match : RVT_1 (HMM E-Value=5.70328e-43)
          Length = 1029

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 14/57 (24%), Positives = 26/57 (45%)
 Frame = +1

Query: 280 NRVSLARLSDGSKNVLLLFQNFHNHVEPLWRARYV*RARTGSRVYEFLSSWFRYSVV 450
           N + +   +DGSKNV  +FQ+F +++  +       R RT   +      W    ++
Sbjct: 451 NWIDVLPSNDGSKNVNDIFQSFFSNISAIIDKHVPLRKRTRKEIKSLSKPWITKGII 507


>SB_21614| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-41)
          Length = 1047

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 14/57 (24%), Positives = 26/57 (45%)
 Frame = +1

Query: 280 NRVSLARLSDGSKNVLLLFQNFHNHVEPLWRARYV*RARTGSRVYEFLSSWFRYSVV 450
           N + +   +DGSKNV  +FQ+F +++  +       R RT   +      W    ++
Sbjct: 550 NWIDVLPSNDGSKNVNDIFQSFFSNISAIIDKHVPLRKRTRKEIKSLSKPWITKGII 606


>SB_10952| Best HMM Match : Exo_endo_phos (HMM E-Value=4.1e-08)
          Length = 558

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 14/57 (24%), Positives = 26/57 (45%)
 Frame = +1

Query: 280 NRVSLARLSDGSKNVLLLFQNFHNHVEPLWRARYV*RARTGSRVYEFLSSWFRYSVV 450
           N + +   +DGSKNV  +FQ+F +++  +       R RT   +      W    ++
Sbjct: 296 NWIDVLPSNDGSKNVNDIFQSFFSNISAIIDKHVPLRKRTRKEIKSLSKPWITKGII 352


>SB_57427| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00044)
          Length = 1693

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 14/57 (24%), Positives = 26/57 (45%)
 Frame = +1

Query: 280  NRVSLARLSDGSKNVLLLFQNFHNHVEPLWRARYV*RARTGSRVYEFLSSWFRYSVV 450
            N + +   +DGSKNV  +FQ+F +++  +       R RT   +      W    ++
Sbjct: 1329 NWIDVLPSNDGSKNVNDIFQSFFSNISAIIDKHVPLRKRTRKEIKSLSKPWITKGII 1385


>SB_48325| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 872

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 14/57 (24%), Positives = 26/57 (45%)
 Frame = +1

Query: 280 NRVSLARLSDGSKNVLLLFQNFHNHVEPLWRARYV*RARTGSRVYEFLSSWFRYSVV 450
           N + +   +DGSKNV  +FQ+F +++  +       R RT   +      W    ++
Sbjct: 400 NWIDVLPSNDGSKNVNDIFQSFFSNISAIIDKHVPLRKRTRKEIKSLSKPWITKGII 456


>SB_33083| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 413

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 14/57 (24%), Positives = 26/57 (45%)
 Frame = +1

Query: 280 NRVSLARLSDGSKNVLLLFQNFHNHVEPLWRARYV*RARTGSRVYEFLSSWFRYSVV 450
           N + +   +DGSKNV  +FQ+F +++  +       R RT   +      W    ++
Sbjct: 203 NWIDVLPSNDGSKNVNDIFQSFFSNISAIIDKHVPLRKRTRKEIKSLSKPWITKGII 259


>SB_10116| Best HMM Match : RVT_1 (HMM E-Value=2.5e-33)
          Length = 759

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 14/57 (24%), Positives = 26/57 (45%)
 Frame = +1

Query: 280 NRVSLARLSDGSKNVLLLFQNFHNHVEPLWRARYV*RARTGSRVYEFLSSWFRYSVV 450
           N + +   +DGSKNV  +FQ+F +++  +       R RT   +      W    ++
Sbjct: 276 NWIDVLPSNDGSKNVNDIFQSFFSNISAIIDKHVPLRKRTRKEIKSLSKPWITKGII 332


>SB_3348| Best HMM Match : Borrelia_orfA (HMM E-Value=0.71)
          Length = 500

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 14/57 (24%), Positives = 26/57 (45%)
 Frame = +1

Query: 280 NRVSLARLSDGSKNVLLLFQNFHNHVEPLWRARYV*RARTGSRVYEFLSSWFRYSVV 450
           N + +   +DGSKNV  +FQ+F +++  +       R RT   +      W    ++
Sbjct: 102 NWIDVLPSNDGSKNVNDIFQSFFSNISAIIDKHVPLRKRTRKEIKSLSKPWITKGII 158


>SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = -1

Query: 199 QRDGSRARHEPRNVINVFYAAGPQTGVVLDVSPRTAMCVRNVDVQMCPAVHTMTRS 32
           Q  G R   E R +   F     QT ++L   P++A+CV+  D  +  A+HT  R+
Sbjct: 156 QSSGMRRLEEERVL---FLETDTQTDMLLG-KPKSAICVQRFDDSLNSAIHTTYRT 207


>SB_49656| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 292

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = -1

Query: 199 QRDGSRARHEPRNVINVFYAAGPQTGVVLDVSPRTAMCVRNVDVQMCPAVHTMTRS 32
           Q  G R   E R +   F     QT ++L   P++A+CV+  D  +  A+HT  R+
Sbjct: 65  QSSGMRRLEEERVL---FLETDTQTDMLLG-KPKSAICVQRFDDSLNSAIHTTYRT 116


>SB_37790| Best HMM Match : HAT (HMM E-Value=0.17)
          Length = 498

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 65  LNIDISNAHCGPWRHIQDHSCLRAGCIKN 151
           L +D+ NA  GPW  I+ H C +  C+ N
Sbjct: 287 LKLDMGNA--GPWGDIKIHPCDKPKCLTN 313


>SB_30084| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 135

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = +1

Query: 262 PKTTITNRVSLARLSDGSKNVLLLFQNFHNHVEPLWRARYV*RARTG-SRVYEFLSS 429
           P + + N      L DG  ++   +    N VEPLW   +V  A+    +V +F+ S
Sbjct: 17  PNSPVQNGTLKQSLEDGKDHMSTCYDWSRNEVEPLWLYEHVEAAKWSIDQVADFIRS 73


>SB_26469| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = -1

Query: 199 QRDGSRARHEPRNVINVFYAAGPQTGVVLDVSPRTAMCVRNVDVQMCPAVHTMTR 35
           Q  G R   E R +   F     QT ++L   P++A+CV+  D  +  A+HT  R
Sbjct: 24  QSSGMRRLEEERVL---FLETDTQTDMLLG-KPKSAICVQRFDDSLNSAIHTTYR 74


>SB_5142| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 65

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 98  PWRHIQDHSCLRAGCIKNI 154
           PWR+  DH CL+   I N+
Sbjct: 5   PWRNAADHHCLKTAIIFNV 23


>SB_5689| Best HMM Match : Ribosomal_L34e (HMM E-Value=0.34)
          Length = 524

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +1

Query: 85  RTLRSVETHPGPLLSEGRLHKKH*SHCVARAALVIRRV 198
           +T+R+V+T P  L +  R H+   +HC       +R V
Sbjct: 365 QTVRTVQTSPDRLCALYRFHQTDCAHCTVTTRQTVRSV 402


>SB_8360| Best HMM Match : RVT_1 (HMM E-Value=3.6e-07)
          Length = 468

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 13/57 (22%), Positives = 25/57 (43%)
 Frame = +1

Query: 280 NRVSLARLSDGSKNVLLLFQNFHNHVEPLWRARYV*RARTGSRVYEFLSSWFRYSVV 450
           N + +   +DG KNV  +FQ+F +++  +       R RT   +      W    ++
Sbjct: 6   NWIDVLPSNDGLKNVNDIFQSFFSNISAIIDKHVPLRKRTRKEIKSLSKPWITKGII 62


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,267,624
Number of Sequences: 59808
Number of extensions: 270259
Number of successful extensions: 915
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 915
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1197191618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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