Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30701
(529 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_29012| Best HMM Match : Avirulence (HMM E-Value=1.1) 32 0.34
SB_56469| Best HMM Match : Exo_endo_phos (HMM E-Value=1.2e-12) 29 1.8
SB_22988| Best HMM Match : RVT_1 (HMM E-Value=5.70328e-43) 29 1.8
SB_21614| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-41) 29 1.8
SB_10952| Best HMM Match : Exo_endo_phos (HMM E-Value=4.1e-08) 29 1.8
SB_57427| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00044) 29 1.8
SB_48325| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_33083| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_10116| Best HMM Match : RVT_1 (HMM E-Value=2.5e-33) 29 1.8
SB_3348| Best HMM Match : Borrelia_orfA (HMM E-Value=0.71) 29 1.8
SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_49656| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_37790| Best HMM Match : HAT (HMM E-Value=0.17) 28 4.1
SB_30084| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_26469| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_5142| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_5689| Best HMM Match : Ribosomal_L34e (HMM E-Value=0.34) 27 7.2
SB_8360| Best HMM Match : RVT_1 (HMM E-Value=3.6e-07) 27 9.6
>SB_29012| Best HMM Match : Avirulence (HMM E-Value=1.1)
Length = 444
Score = 31.9 bits (69), Expect = 0.34
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1
Query: 85 RTLRSVETHPGPLLSEGRLHKKH*SHCVARAALVIRRV 198
+T+R V+T P L + RLH H +HC L +R V
Sbjct: 370 QTVRIVQTPPDRLCALYRLHHTHSAHCTDTTRLTVRTV 407
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 85 RTLRSVETHPGPLLSEGRLHKKH*SHCVARAALVIRRV 198
+TLR V+T P L + R H+ H +HC +R V
Sbjct: 210 QTLRIVQTPPDRLCALYRFHQTHCAHCTDFTRQTVRTV 247
>SB_56469| Best HMM Match : Exo_endo_phos (HMM E-Value=1.2e-12)
Length = 652
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/57 (24%), Positives = 26/57 (45%)
Frame = +1
Query: 280 NRVSLARLSDGSKNVLLLFQNFHNHVEPLWRARYV*RARTGSRVYEFLSSWFRYSVV 450
N + + +DGSKNV +FQ+F +++ + R RT + W ++
Sbjct: 544 NWIDVLPSNDGSKNVNDIFQSFFSNISAIIDKHVPLRKRTRKEIKSLSKPWITKGII 600
>SB_22988| Best HMM Match : RVT_1 (HMM E-Value=5.70328e-43)
Length = 1029
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/57 (24%), Positives = 26/57 (45%)
Frame = +1
Query: 280 NRVSLARLSDGSKNVLLLFQNFHNHVEPLWRARYV*RARTGSRVYEFLSSWFRYSVV 450
N + + +DGSKNV +FQ+F +++ + R RT + W ++
Sbjct: 451 NWIDVLPSNDGSKNVNDIFQSFFSNISAIIDKHVPLRKRTRKEIKSLSKPWITKGII 507
>SB_21614| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-41)
Length = 1047
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/57 (24%), Positives = 26/57 (45%)
Frame = +1
Query: 280 NRVSLARLSDGSKNVLLLFQNFHNHVEPLWRARYV*RARTGSRVYEFLSSWFRYSVV 450
N + + +DGSKNV +FQ+F +++ + R RT + W ++
Sbjct: 550 NWIDVLPSNDGSKNVNDIFQSFFSNISAIIDKHVPLRKRTRKEIKSLSKPWITKGII 606
>SB_10952| Best HMM Match : Exo_endo_phos (HMM E-Value=4.1e-08)
Length = 558
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/57 (24%), Positives = 26/57 (45%)
Frame = +1
Query: 280 NRVSLARLSDGSKNVLLLFQNFHNHVEPLWRARYV*RARTGSRVYEFLSSWFRYSVV 450
N + + +DGSKNV +FQ+F +++ + R RT + W ++
Sbjct: 296 NWIDVLPSNDGSKNVNDIFQSFFSNISAIIDKHVPLRKRTRKEIKSLSKPWITKGII 352
>SB_57427| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00044)
Length = 1693
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/57 (24%), Positives = 26/57 (45%)
Frame = +1
Query: 280 NRVSLARLSDGSKNVLLLFQNFHNHVEPLWRARYV*RARTGSRVYEFLSSWFRYSVV 450
N + + +DGSKNV +FQ+F +++ + R RT + W ++
Sbjct: 1329 NWIDVLPSNDGSKNVNDIFQSFFSNISAIIDKHVPLRKRTRKEIKSLSKPWITKGII 1385
>SB_48325| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 872
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/57 (24%), Positives = 26/57 (45%)
Frame = +1
Query: 280 NRVSLARLSDGSKNVLLLFQNFHNHVEPLWRARYV*RARTGSRVYEFLSSWFRYSVV 450
N + + +DGSKNV +FQ+F +++ + R RT + W ++
Sbjct: 400 NWIDVLPSNDGSKNVNDIFQSFFSNISAIIDKHVPLRKRTRKEIKSLSKPWITKGII 456
>SB_33083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 413
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/57 (24%), Positives = 26/57 (45%)
Frame = +1
Query: 280 NRVSLARLSDGSKNVLLLFQNFHNHVEPLWRARYV*RARTGSRVYEFLSSWFRYSVV 450
N + + +DGSKNV +FQ+F +++ + R RT + W ++
Sbjct: 203 NWIDVLPSNDGSKNVNDIFQSFFSNISAIIDKHVPLRKRTRKEIKSLSKPWITKGII 259
>SB_10116| Best HMM Match : RVT_1 (HMM E-Value=2.5e-33)
Length = 759
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/57 (24%), Positives = 26/57 (45%)
Frame = +1
Query: 280 NRVSLARLSDGSKNVLLLFQNFHNHVEPLWRARYV*RARTGSRVYEFLSSWFRYSVV 450
N + + +DGSKNV +FQ+F +++ + R RT + W ++
Sbjct: 276 NWIDVLPSNDGSKNVNDIFQSFFSNISAIIDKHVPLRKRTRKEIKSLSKPWITKGII 332
>SB_3348| Best HMM Match : Borrelia_orfA (HMM E-Value=0.71)
Length = 500
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/57 (24%), Positives = 26/57 (45%)
Frame = +1
Query: 280 NRVSLARLSDGSKNVLLLFQNFHNHVEPLWRARYV*RARTGSRVYEFLSSWFRYSVV 450
N + + +DGSKNV +FQ+F +++ + R RT + W ++
Sbjct: 102 NWIDVLPSNDGSKNVNDIFQSFFSNISAIIDKHVPLRKRTRKEIKSLSKPWITKGII 158
>SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 337
Score = 28.3 bits (60), Expect = 4.1
Identities = 18/56 (32%), Positives = 28/56 (50%)
Frame = -1
Query: 199 QRDGSRARHEPRNVINVFYAAGPQTGVVLDVSPRTAMCVRNVDVQMCPAVHTMTRS 32
Q G R E R + F QT ++L P++A+CV+ D + A+HT R+
Sbjct: 156 QSSGMRRLEEERVL---FLETDTQTDMLLG-KPKSAICVQRFDDSLNSAIHTTYRT 207
>SB_49656| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 292
Score = 28.3 bits (60), Expect = 4.1
Identities = 18/56 (32%), Positives = 28/56 (50%)
Frame = -1
Query: 199 QRDGSRARHEPRNVINVFYAAGPQTGVVLDVSPRTAMCVRNVDVQMCPAVHTMTRS 32
Q G R E R + F QT ++L P++A+CV+ D + A+HT R+
Sbjct: 65 QSSGMRRLEEERVL---FLETDTQTDMLLG-KPKSAICVQRFDDSLNSAIHTTYRT 116
>SB_37790| Best HMM Match : HAT (HMM E-Value=0.17)
Length = 498
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 65 LNIDISNAHCGPWRHIQDHSCLRAGCIKN 151
L +D+ NA GPW I+ H C + C+ N
Sbjct: 287 LKLDMGNA--GPWGDIKIHPCDKPKCLTN 313
>SB_30084| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 135
Score = 28.3 bits (60), Expect = 4.1
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = +1
Query: 262 PKTTITNRVSLARLSDGSKNVLLLFQNFHNHVEPLWRARYV*RARTG-SRVYEFLSS 429
P + + N L DG ++ + N VEPLW +V A+ +V +F+ S
Sbjct: 17 PNSPVQNGTLKQSLEDGKDHMSTCYDWSRNEVEPLWLYEHVEAAKWSIDQVADFIRS 73
>SB_26469| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 27.9 bits (59), Expect = 5.5
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = -1
Query: 199 QRDGSRARHEPRNVINVFYAAGPQTGVVLDVSPRTAMCVRNVDVQMCPAVHTMTR 35
Q G R E R + F QT ++L P++A+CV+ D + A+HT R
Sbjct: 24 QSSGMRRLEEERVL---FLETDTQTDMLLG-KPKSAICVQRFDDSLNSAIHTTYR 74
>SB_5142| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 65
Score = 27.9 bits (59), Expect = 5.5
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +2
Query: 98 PWRHIQDHSCLRAGCIKNI 154
PWR+ DH CL+ I N+
Sbjct: 5 PWRNAADHHCLKTAIIFNV 23
>SB_5689| Best HMM Match : Ribosomal_L34e (HMM E-Value=0.34)
Length = 524
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 85 RTLRSVETHPGPLLSEGRLHKKH*SHCVARAALVIRRV 198
+T+R+V+T P L + R H+ +HC +R V
Sbjct: 365 QTVRTVQTSPDRLCALYRFHQTDCAHCTVTTRQTVRSV 402
>SB_8360| Best HMM Match : RVT_1 (HMM E-Value=3.6e-07)
Length = 468
Score = 27.1 bits (57), Expect = 9.6
Identities = 13/57 (22%), Positives = 25/57 (43%)
Frame = +1
Query: 280 NRVSLARLSDGSKNVLLLFQNFHNHVEPLWRARYV*RARTGSRVYEFLSSWFRYSVV 450
N + + +DG KNV +FQ+F +++ + R RT + W ++
Sbjct: 6 NWIDVLPSNDGLKNVNDIFQSFFSNISAIIDKHVPLRKRTRKEIKSLSKPWITKGII 62
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,267,624
Number of Sequences: 59808
Number of extensions: 270259
Number of successful extensions: 915
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 915
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1197191618
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -