Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30701
(529 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75527-4|CAA99779.2| 316|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z69664-9|CAA93519.2| 1470|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z68880-10|CAA93100.2| 1470|Caenorhabditis elegans Hypothetical p... 29 2.7
DQ178236-1|ABA18178.1| 316|Caenorhabditis elegans putative low ... 29 2.7
AF308449-1|AAL09435.1| 1347|Caenorhabditis elegans PXF isoform C... 29 2.7
AF308447-1|AAL09433.1| 1470|Caenorhabditis elegans PXF isoform A... 29 2.7
AF170796-1|AAF22963.1| 1470|Caenorhabditis elegans RA-GEF protein. 29 2.7
U42839-7|AAC69012.1| 1722|Caenorhabditis elegans Drosophila crum... 27 6.3
AF022982-3|AAB69932.1| 670|Caenorhabditis elegans Hypothetical ... 27 6.3
U00048-13|AAB53830.1| 484|Caenorhabditis elegans Maternal effec... 27 8.3
U00048-12|AAL27228.1| 507|Caenorhabditis elegans Maternal effec... 27 8.3
>Z75527-4|CAA99779.2| 316|Caenorhabditis elegans Hypothetical
protein C15C8.4 protein.
Length = 316
Score = 28.7 bits (61), Expect = 2.7
Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = -1
Query: 436 ETKTTKIHIHENLYAHAKHNA--RAREVRRDYENFEITIKHF*IRRR 302
E++ KI H+ + + +A R ++ + YEN E++IKH + R+
Sbjct: 252 ESQLKKIEFHKEEVSRLQEDAEERGKDKSQVYENLELSIKHEKLNRK 298
>Z69664-9|CAA93519.2| 1470|Caenorhabditis elegans Hypothetical protein
T14G10.2a protein.
Length = 1470
Score = 28.7 bits (61), Expect = 2.7
Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Frame = -1
Query: 262 VRFN*KKQHVTTSTNA*RGTRQRDGSRARHEPRNV-INVFYAAGPQTGVVLDVSPRTAMC 86
V+ N + VTT + G RQR GS R + N+ + FY T L VSPR ++
Sbjct: 1292 VQLNEETSTVTTYYQSDNGRRQRSGSEGRFD--NIPPSTFYL----TSDGLTVSPRQSL- 1344
Query: 85 VRNVDVQMCPAVHTMTRS*CVLHRPAS 5
+V + P H+ T C PAS
Sbjct: 1345 --SVVIPTHPHGHSPTSPRCRSRSPAS 1369
>Z68880-10|CAA93100.2| 1470|Caenorhabditis elegans Hypothetical
protein T14G10.2a protein.
Length = 1470
Score = 28.7 bits (61), Expect = 2.7
Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Frame = -1
Query: 262 VRFN*KKQHVTTSTNA*RGTRQRDGSRARHEPRNV-INVFYAAGPQTGVVLDVSPRTAMC 86
V+ N + VTT + G RQR GS R + N+ + FY T L VSPR ++
Sbjct: 1292 VQLNEETSTVTTYYQSDNGRRQRSGSEGRFD--NIPPSTFYL----TSDGLTVSPRQSL- 1344
Query: 85 VRNVDVQMCPAVHTMTRS*CVLHRPAS 5
+V + P H+ T C PAS
Sbjct: 1345 --SVVIPTHPHGHSPTSPRCRSRSPAS 1369
>DQ178236-1|ABA18178.1| 316|Caenorhabditis elegans putative low
density lipoproteinreceptor associated protein (37.4 kD)
protein.
Length = 316
Score = 28.7 bits (61), Expect = 2.7
Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = -1
Query: 436 ETKTTKIHIHENLYAHAKHNA--RAREVRRDYENFEITIKHF*IRRR 302
E++ KI H+ + + +A R ++ + YEN E++IKH + R+
Sbjct: 252 ESQLKKIEFHKEEVSRLQEDAEERGKDKSQVYENLELSIKHEKLNRK 298
>AF308449-1|AAL09435.1| 1347|Caenorhabditis elegans PXF isoform C
protein.
Length = 1347
Score = 28.7 bits (61), Expect = 2.7
Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Frame = -1
Query: 262 VRFN*KKQHVTTSTNA*RGTRQRDGSRARHEPRNV-INVFYAAGPQTGVVLDVSPRTAMC 86
V+ N + VTT + G RQR GS R + N+ + FY T L VSPR ++
Sbjct: 1169 VQLNEETSTVTTYYQSDNGRRQRSGSEGRFD--NIPPSTFYL----TSDGLTVSPRQSL- 1221
Query: 85 VRNVDVQMCPAVHTMTRS*CVLHRPAS 5
+V + P H+ T C PAS
Sbjct: 1222 --SVVIPTHPHGHSPTSPRCRSRSPAS 1246
>AF308447-1|AAL09433.1| 1470|Caenorhabditis elegans PXF isoform A
protein.
Length = 1470
Score = 28.7 bits (61), Expect = 2.7
Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Frame = -1
Query: 262 VRFN*KKQHVTTSTNA*RGTRQRDGSRARHEPRNV-INVFYAAGPQTGVVLDVSPRTAMC 86
V+ N + VTT + G RQR GS R + N+ + FY T L VSPR ++
Sbjct: 1292 VQLNEETSTVTTYYQSDNGRRQRSGSEGRFD--NIPPSTFYL----TSDGLTVSPRQSL- 1344
Query: 85 VRNVDVQMCPAVHTMTRS*CVLHRPAS 5
+V + P H+ T C PAS
Sbjct: 1345 --SVVIPTHPHGHSPTSPRCRSRSPAS 1369
>AF170796-1|AAF22963.1| 1470|Caenorhabditis elegans RA-GEF protein.
Length = 1470
Score = 28.7 bits (61), Expect = 2.7
Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Frame = -1
Query: 262 VRFN*KKQHVTTSTNA*RGTRQRDGSRARHEPRNV-INVFYAAGPQTGVVLDVSPRTAMC 86
V+ N + VTT + G RQR GS R + N+ + FY T L VSPR ++
Sbjct: 1292 VQLNEETSTVTTYYQSDNGRRQRSGSEGRFD--NIPPSTFYL----TSDGLTVSPRQSL- 1344
Query: 85 VRNVDVQMCPAVHTMTRS*CVLHRPAS 5
+V + P H+ T C PAS
Sbjct: 1345 --SVVIPTHPHGHSPTSPRCRSRSPAS 1369
>U42839-7|AAC69012.1| 1722|Caenorhabditis elegans Drosophila crumbs
homolog protein 1 protein.
Length = 1722
Score = 27.5 bits (58), Expect = 6.3
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 6/44 (13%)
Frame = -3
Query: 161 CD*CFLCSRPSD-RSGPGCVSTDRNVRSKC-----RCSNVSCSS 48
C+ C S D SGP C+ D KC +CS VSC S
Sbjct: 472 CEDCVNSSNCLDVESGPVCICDDGYFGQKCDQKHDKCSKVSCPS 515
>AF022982-3|AAB69932.1| 670|Caenorhabditis elegans Hypothetical
protein T23B12.6 protein.
Length = 670
Score = 27.5 bits (58), Expect = 6.3
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -1
Query: 169 PRNVINVF-YAAGPQTGVVLDVSPRTAMCVRNVDVQMCPA 53
PR++IN+ Y+ GP +LDV +C + CP+
Sbjct: 627 PRSLINLSNYSGGPTPQELLDVIDDNDICCSTPSLSRCPS 666
>U00048-13|AAB53830.1| 484|Caenorhabditis elegans Maternal effect
lethal protein32, isoform a protein.
Length = 484
Score = 27.1 bits (57), Expect = 8.3
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = -1
Query: 463 LIQRQQQNNETKTTKIHIHENLYAHAKHNARAREVRRDYENFEITIKHF*IRRRD--ELA 290
L R Q + + IHE + K+NA A + +D+++F T + F ++D +LA
Sbjct: 410 LTSRGFQEQDFEKVGDFIHEGVQIAKKYNAEAGKTLKDFKSFTETNEPF---KKDVADLA 466
Query: 289 KR 284
KR
Sbjct: 467 KR 468
>U00048-12|AAL27228.1| 507|Caenorhabditis elegans Maternal effect
lethal protein32, isoform b protein.
Length = 507
Score = 27.1 bits (57), Expect = 8.3
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = -1
Query: 463 LIQRQQQNNETKTTKIHIHENLYAHAKHNARAREVRRDYENFEITIKHF*IRRRD--ELA 290
L R Q + + IHE + K+NA A + +D+++F T + F ++D +LA
Sbjct: 433 LTSRGFQEQDFEKVGDFIHEGVQIAKKYNAEAGKTLKDFKSFTETNEPF---KKDVADLA 489
Query: 289 KR 284
KR
Sbjct: 490 KR 491
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,356,168
Number of Sequences: 27780
Number of extensions: 197196
Number of successful extensions: 538
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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