Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30701
         (529 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            24   1.1  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    22   3.4  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    22   3.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   3.4  

>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -1

Query: 394 AHAKHNARAREVRRDYENFEITIKHF 317
           AH   N+RA     DY     T+K+F
Sbjct: 127 AHGTGNSRANTYNFDYPQVPYTVKNF 152


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +1

Query: 331 LFQNFHNHVEPLWR 372
           LF N HNH++ +++
Sbjct: 51  LFDNVHNHIQNIFK 64


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +1

Query: 331 LFQNFHNHVEPLWR 372
           LF N HNH++ +++
Sbjct: 34  LFDNVHNHIQNIFK 47


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = -1

Query: 463  LIQRQQQNNETKTTKIHIHENLYAHAKHNARARE 362
            ++Q+QQQ  + +  +    +      +H AR RE
Sbjct: 1207 MVQQQQQQQQQQQQQQQQQQQQQQQQQHQARERE 1240


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,189
Number of Sequences: 438
Number of extensions: 2174
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14845611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)