Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30699
         (549 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces...    70   2e-13
SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein L15b|Schizos...    70   2e-13
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual     28   1.0  
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo...    28   1.0  
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S...    28   1.0  
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos...    26   4.2  
SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom...    25   5.6  
SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomy...    25   5.6  
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    25   5.6  
SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr 2||...    25   7.3  
SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family Sec14|Schi...    25   7.3  
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    25   9.7  
SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomy...    25   9.7  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    25   9.7  

>SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 201

 Score = 70.1 bits (164), Expect = 2e-13
 Identities = 40/121 (33%), Positives = 62/121 (51%)
 Frame = +1

Query: 145 HRSPIPTTPDKALTLDYPTKQAYLVFTIPLPRARPQAPVSNAGHLSAIPTSMLSTSFKPT 324
           HR+  P+ PDKA  L Y  KQ Y+++ I + R   + PV   G     P        K  
Sbjct: 37  HRASRPSRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPK-GQTYGKPVHQGVNHLKYQ 95

Query: 325 RNLQSIAQATCLSVLPVLSIYSALTGFHNILHTRYFQVILVDPSHNSIRLDPKVNWILNA 504
           R+ +  A+         L + ++     +  + ++F+VILVDPSH +IR DP++NWI+N 
Sbjct: 96  RSARCTAEERVGRYCSNLRVLNSYWVNQDATY-KFFEVILVDPSHKAIRRDPRINWIVNP 154

Query: 505 V 507
           V
Sbjct: 155 V 155


>SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein
           L15b|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score = 70.1 bits (164), Expect = 2e-13
 Identities = 40/121 (33%), Positives = 62/121 (51%)
 Frame = +1

Query: 145 HRSPIPTTPDKALTLDYPTKQAYLVFTIPLPRARPQAPVSNAGHLSAIPTSMLSTSFKPT 324
           HR+  P+ PDKA  L Y  KQ Y+++ I + R   + PV   G     P        K  
Sbjct: 37  HRASRPSRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPK-GQTYGKPVHQGVNHLKYQ 95

Query: 325 RNLQSIAQATCLSVLPVLSIYSALTGFHNILHTRYFQVILVDPSHNSIRLDPKVNWILNA 504
           R+ +  A+         L + ++     +  + ++F+VILVDPSH +IR DP++NWI+N 
Sbjct: 96  RSARCTAEERVGRYCSNLRVLNSYWVNQDATY-KFFEVILVDPSHKAIRRDPRINWIVNP 154

Query: 505 V 507
           V
Sbjct: 155 V 155


>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1029

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 24/81 (29%), Positives = 33/81 (40%)
 Frame = +1

Query: 172 DKALTLDYPTKQAYLVFTIPLPRARPQAPVSNAGHLSAIPTSMLSTSFKPTRNLQSIAQA 351
           D    LD P +Q  L     LP    Q+P+S   HL AI   +LST F       S   +
Sbjct: 72  DAPSPLDIPEEQKALFRQNILP-VLLQSPMSTRSHLMAILNIILSTDFPEYWPGFSEYTS 130

Query: 352 TCLSVLPVLSIYSALTGFHNI 414
             +       +Y+ L  FH +
Sbjct: 131 NLVHSTERCEVYAGLICFHEL 151


>SPBC32C12.02 |ste11|aff1, stex|transcription factor
           Ste11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 468

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 17/63 (26%), Positives = 28/63 (44%)
 Frame = +1

Query: 190 DYPTKQAYLVFTIPLPRARPQAPVSNAGHLSAIPTSMLSTSFKPTRNLQSIAQATCLSVL 369
           DY   Q     +  L +  P+ PV+    L+A+    LS       NL   ++ +CLS  
Sbjct: 107 DYVVLQQIAQSSKTLKQTEPEKPVNEEETLAALLAPALSYPKSGKSNLIETSELSCLSSS 166

Query: 370 PVL 378
           P++
Sbjct: 167 PMI 169


>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 17/81 (20%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
 Frame = +1

Query: 178 ALTLDYPTKQAYLVFTIPLPRARPQAPVSNAGHLSAIPTSMLSTSFKPTRNLQSIAQATC 357
           ++ +D P          P P  R + P+ +    S++ +S  S+  +   N+ S +  + 
Sbjct: 521 SINIDIPPSPLQNTVISPQPTRRSRTPIRSLSGRSSVASSRNSSRTRSYSNVSSASSNSL 580

Query: 358 LSVL---PVLSIYSALTGFHN 411
           +S++   P  S     T FH+
Sbjct: 581 ISIISSKPSSSTVQRQTPFHS 601


>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
           Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 849

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 21/93 (22%), Positives = 40/93 (43%)
 Frame = +1

Query: 64  VYEKTDPSYAFFLRLSLYGSTVT*LLWHRSPIPTTPDKALTLDYPTKQAYLVFTIPLPRA 243
           ++ K + S    L   +Y ST+   + ++      P   LTL  PT   +    + +P  
Sbjct: 419 IHTKRNDSIIVQLFQGMYKSTLECSICYQKSTAFDPFMYLTLPLPTSAKWRHKVVYVPPF 478

Query: 244 RPQAPVSNAGHLSAIPTSMLSTSFKPTRNLQSI 342
             Q+PV     L  + ++++   F+ T  LQ +
Sbjct: 479 GTQSPVELYLEL-LMESTVIQMKFQATEKLQKM 510


>SPBC1778.02 |rap1||telomere binding protein
           Rap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 693

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 99  SSPLTLWQYRHLTPMAPLSHSHNPRQSP 182
           S+PL L   +HL+P+   +H +NP   P
Sbjct: 410 SNPLHLVDSQHLSPLNRKTHFNNPIGQP 437


>SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 215

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 18/59 (30%), Positives = 25/59 (42%)
 Frame = +1

Query: 145 HRSPIPTTPDKALTLDYPTKQAYLVFTIPLPRARPQAPVSNAGHLSAIPTSMLSTSFKP 321
           H +P+P++ D     DY T   +L F+   P       VSN    S IP+   S    P
Sbjct: 70  HIAPLPSSCDIDFK-DYSTSAFHLHFSPLTPNHASTEAVSNFKQSSTIPSISKSNLTNP 127


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
           protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1385

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
 Frame = +1

Query: 223 TIPLPRARPQAPVSNAGHLSAIPTSMLSTSFKPTRNLQSIAQA----TCLSVLPVLSIYS 390
           TI +    P+ P S    ++  P+S L ++  PT N+  + +A    T  S  PV +I S
Sbjct: 684 TITVSDVYPKKPASPV-EITEPPSSALVSATSPTTNVPIVPEAVHLSTAFSTAPVSTIVS 742

Query: 391 ALT 399
            ++
Sbjct: 743 NIS 745


>SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 525

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = -2

Query: 191 SSVRALSGVVGMGERCHRSQVTVLP*SERRRKK 93
           +S+  +S  V +GE CH+S++     +E +R++
Sbjct: 240 ASLGIISDYVLLGEACHKSEIASQRMNELKRRR 272


>SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family
           Sec14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 286

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +1

Query: 229 PLPRARPQAPVSNAGHLSAIPTSMLST 309
           P P   P AP+ + GHL++   + L +
Sbjct: 8   PYPLTNPNAPLGHPGHLNSTQQATLDS 34


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 12/49 (24%), Positives = 25/49 (51%)
 Frame = +1

Query: 319  PTRNLQSIAQATCLSVLPVLSIYSALTGFHNILHTRYFQVILVDPSHNS 465
            P   L++     CL+V+P++  +S+     N    + F   L+DP +++
Sbjct: 949  PPEVLRTALSQVCLNVVPLVKRFSSAGNSVNQGSIKKFMNSLIDPPNDA 997


>SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 385

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +1

Query: 247 PQAPVSNAGHLSAIPTSMLSTSFKPTRN-LQSIAQATCLSVLPVLSIYSALTGFHNILHT 423
           P   VS++       +  +S S   T N + S + ++ +S  PV +IYS  +G   +  +
Sbjct: 96  PITTVSSSDSFIPSSSQTISASSSTTDNVIVSSSISSTVSSTPVSTIYSGTSGTTFVSSS 155

Query: 424 RYFQVI 441
             +QVI
Sbjct: 156 TTYQVI 161


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -2

Query: 521 LTMLSTALRIQLTLGSRRMELCDGSTRITWKY 426
           +T LS AL +   L      LCD +  +TW +
Sbjct: 467 ITALSAALSLGTVLFCLHTFLCDSTVLMTWSW 498


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,460,090
Number of Sequences: 5004
Number of extensions: 52374
Number of successful extensions: 167
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)