Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30699
(549 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0257 + 11145558-11145876,11148181-11148347,11149114-111493... 68 6e-12
03_05_0228 - 22137771-22138016,22138109-22138306,22138852-221390... 68 6e-12
06_02_0082 + 11536799-11537554,11538210-11538334,11538507-11538687 38 0.005
06_01_0657 + 4767803-4768114,4768394-4768471,4768763-4768786 29 2.4
10_08_0165 + 15356748-15356811,15357113-15357186,15357311-153573... 29 3.2
04_03_0121 + 11506644-11508107 29 3.2
05_04_0300 - 19969066-19969535,19971216-19972686 28 4.3
03_05_0837 + 28090924-28091880 28 5.6
03_01_0013 - 105281-105552,105762-105838,105839-106524,106655-10... 28 5.6
01_06_0802 + 32087661-32087965,32088106-32088220,32088302-320884... 28 5.6
08_02_1487 - 27479463-27479988,27481625-27481887 27 7.5
07_03_1772 + 29411874-29413218,29413355-29413421,29413749-294138... 27 7.5
01_05_0212 + 19347142-19347444,19348853-19348907,19349117-193492... 27 7.5
09_06_0224 + 21661317-21661386,21663735-21663865,21663904-216639... 27 9.9
09_06_0043 + 20448793-20449823,20449915-20450030,20450491-204506... 27 9.9
03_02_0956 + 12700507-12700540,12700640-12700676,12700792-127010... 27 9.9
>05_03_0257 +
11145558-11145876,11148181-11148347,11149114-11149311,
11149405-11149650
Length = 309
Score = 67.7 bits (158), Expect = 6e-12
Identities = 39/116 (33%), Positives = 62/116 (53%)
Frame = +1
Query: 160 PTTPDKALTLDYPTKQAYLVFTIPLPRARPQAPVSNAGHLSAIPTSMLSTSFKPTRNLQS 339
PT PDKA L Y KQ Y+V+ + + R + PV G + P T K RN +S
Sbjct: 147 PTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPK-GIVYGKPKHQGITQLKFQRNKRS 205
Query: 340 IAQATCLSVLPVLSIYSALTGFHNILHTRYFQVILVDPSHNSIRLDPKVNWILNAV 507
+A+ L L + ++ + + +YF++ILVD +H++IR DP++NW+ V
Sbjct: 206 VAEERAGRKLGGLRVLNSYWVNEDSTY-KYFEIILVDVAHSAIRNDPRINWLCKPV 260
>03_05_0228 -
22137771-22138016,22138109-22138306,22138852-22139018,
22139129-22139132
Length = 204
Score = 67.7 bits (158), Expect = 6e-12
Identities = 39/116 (33%), Positives = 62/116 (53%)
Frame = +1
Query: 160 PTTPDKALTLDYPTKQAYLVFTIPLPRARPQAPVSNAGHLSAIPTSMLSTSFKPTRNLQS 339
PT PDKA L Y KQ Y+V+ + + R + PV G + P T K RN +S
Sbjct: 42 PTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPK-GIVYGKPKHQGITQLKFQRNKRS 100
Query: 340 IAQATCLSVLPVLSIYSALTGFHNILHTRYFQVILVDPSHNSIRLDPKVNWILNAV 507
+A+ L L + ++ + + +YF++ILVD +H++IR DP++NW+ V
Sbjct: 101 VAEERAGRKLGGLRVLNSYWVNEDSTY-KYFEIILVDVAHSAIRNDPRINWLCKPV 155
>06_02_0082 + 11536799-11537554,11538210-11538334,11538507-11538687
Length = 353
Score = 37.9 bits (84), Expect = 0.005
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +1
Query: 430 FQVILVDPSHNSIRLDPKVNWILNAVLSIVRS-WSHFC 540
F++ILVD +H++IR DPK L A R+ WSH C
Sbjct: 299 FEIILVDVAHSAIRDDPKDQLALQACAQARRAPWSHLC 336
>06_01_0657 + 4767803-4768114,4768394-4768471,4768763-4768786
Length = 137
Score = 29.1 bits (62), Expect = 2.4
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Frame = -1
Query: 384 DGEHRKDGQARCLSNGLKVACG----LEAG*QHGC 292
+GE RK+ + RCL K ACG E G + GC
Sbjct: 43 EGEGRKEERGRCLQRERKEACGSENKKEKGRERGC 77
>10_08_0165 +
15356748-15356811,15357113-15357186,15357311-15357394,
15357508-15357602,15357737-15357790,15357791-15357896,
15358236-15358277,15358585-15358674,15358788-15358984,
15359355-15359413,15360166-15362252
Length = 983
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +1
Query: 142 WHRSPIPTTPDKALTLDYPTKQAYLVFTIPLPRARPQA 255
WH+ I D L DY K+A LV + L + P A
Sbjct: 880 WHKGDIAAAADARLCGDYDAKEAALVLKLGLLCSHPVA 917
>04_03_0121 + 11506644-11508107
Length = 487
Score = 28.7 bits (61), Expect = 3.2
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +1
Query: 52 YSTLVYEKTDPSYAFFLRLSLYGSTVT*LLWHRSPI-PTTPDKALTLDYP 198
++ V + ++AFF+ +GS V LW PI P + L +YP
Sbjct: 131 WTVTVARRRGCAHAFFVSCGAFGSAVVHSLWSHLPIRPDEAGRILLPEYP 180
>05_04_0300 - 19969066-19969535,19971216-19972686
Length = 646
Score = 28.3 bits (60), Expect = 4.3
Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Frame = +1
Query: 226 IPLPRARPQAPVSNAGHLSAIPT-SMLSTSFKPTRNLQSIAQATCLSVLPVLSIYSA-LT 399
+P+PR +PQ PV ++ + + + K + +A + L +L ++ ++ A +
Sbjct: 273 VPIPRLKPQQPVPSSKVVKKPESKKTVENKSKSKTKTKKVASVSLLGLLLIMLVFGAFIP 332
Query: 400 GF-HN 411
GF HN
Sbjct: 333 GFNHN 337
>03_05_0837 + 28090924-28091880
Length = 318
Score = 27.9 bits (59), Expect = 5.6
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 355 CLSVLPVLSIYSALTGFHNILHTRYFQVI 441
C +L +S+YS LTGFH + RY +++
Sbjct: 15 CRGILEEVSVYSPLTGFHATM-PRYDELL 42
>03_01_0013 -
105281-105552,105762-105838,105839-106524,106655-106738,
106914-107114,107202-107309,107766-107855,108505-108551,
109096-109276,110010-110135,110220-110386,110877-111072
Length = 744
Score = 27.9 bits (59), Expect = 5.6
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +3
Query: 6 LYTSATHC*HRVPTHIFNTCIRKN*PILCLFSSPLTLWQY 125
LYTS+ +P H+F+ +RKN LF + L Y
Sbjct: 701 LYTSSAIITEFIPPHVFSMALRKNMSARQLFDMYILLLSY 740
>01_06_0802 +
32087661-32087965,32088106-32088220,32088302-32088421,
32089678-32089788,32090084-32090122,32090965-32091069,
32091149-32091187,32091923-32092015
Length = 308
Score = 27.9 bits (59), Expect = 5.6
Identities = 18/53 (33%), Positives = 24/53 (45%)
Frame = +1
Query: 193 YPTKQAYLVFTIPLPRARPQAPVSNAGHLSAIPTSMLSTSFKPTRNLQSIAQA 351
YP K YL F IP+P A A + A L T + +F P + + I A
Sbjct: 247 YPKKLVYLYFFIPIPAAIMGAILIGADLLRVKETILNIITFIPVVDCKGIFMA 299
>08_02_1487 - 27479463-27479988,27481625-27481887
Length = 262
Score = 27.5 bits (58), Expect = 7.5
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +1
Query: 472 LDPKVNWILNAVLSIVRSWSHF 537
LDP VNW+L A L W +F
Sbjct: 189 LDPLVNWLLEAELPADEPWLNF 210
>07_03_1772 + 29411874-29413218,29413355-29413421,29413749-29413896,
29415293-29415416,29416340-29416590,29416923-29418449,
29418786-29418896,29419576-29419734,29419827-29421734
Length = 1879
Score = 27.5 bits (58), Expect = 7.5
Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Frame = -3
Query: 151 SGAIGVK*R--YCHRVRGEEKRHKMGQFFRIQVLNICVG 41
SG +GV +C +V G+ KRH + ++ Q+++ C+G
Sbjct: 1049 SGTLGVNCEPAFCQKVGGKRKRHMCEREYK-QMIDQCIG 1086
>01_05_0212 +
19347142-19347444,19348853-19348907,19349117-19349292,
19350033-19350254,19350359-19350597,19351100-19351625,
19351707-19351980,19352166-19352225,19352362-19353025,
19353747-19353975,19354071-19354337,19354414-19354602,
19354771-19355415
Length = 1282
Score = 27.5 bits (58), Expect = 7.5
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Frame = +1
Query: 175 KALTLDYPTKQAYLV---FTIPLPRARPQAPVSNAGHLSAIPTSMLSTSFKP 321
K + YPT+ YLV F++ +P R A V +G + S++ + P
Sbjct: 384 KDVYFSYPTRPEYLVFNGFSLQIPSGRTMALVGESGSGKSTVISLVERFYDP 435
>09_06_0224 +
21661317-21661386,21663735-21663865,21663904-21663983,
21664248-21664372,21664745-21664830,21664932-21665168,
21665261-21665380,21665502-21665602,21665655-21665758,
21665851-21666047
Length = 416
Score = 27.1 bits (57), Expect = 9.9
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +3
Query: 387 FSSYWVSQHSSYKVFPGYPRGPVTQFH 467
FS +W+ Q+S+ K GY +G ++ H
Sbjct: 33 FSRFWLQQNSNLKRSKGYEQGELSLAH 59
>09_06_0043 +
20448793-20449823,20449915-20450030,20450491-20450661,
20450761-20450807,20451090-20451182,20451571-20451709,
20452028-20452130,20452749-20452866
Length = 605
Score = 27.1 bits (57), Expect = 9.9
Identities = 18/64 (28%), Positives = 31/64 (48%)
Frame = +1
Query: 226 IPLPRARPQAPVSNAGHLSAIPTSMLSTSFKPTRNLQSIAQATCLSVLPVLSIYSALTGF 405
+PLPR R Q P+S A S + + S + +++ LS P L+ +AL G+
Sbjct: 36 LPLPRRRGQRPISAAAAASDLLYAAPSLKSRLAAG-ETLYGLFLLSFSPTLAELAALAGY 94
Query: 406 HNIL 417
++
Sbjct: 95 DYVV 98
>03_02_0956 +
12700507-12700540,12700640-12700676,12700792-12701002,
12701085-12701246,12701897-12702016,12702103-12702525
Length = 328
Score = 27.1 bits (57), Expect = 9.9
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +2
Query: 314 SSPHATFNPLLRQRACPSFRCSPSIQLLLGFTTFFIQGISR 436
+SP ATF ++R ++ FR P + LL + + G+ +
Sbjct: 21 ASPIATFRRIVRSKSTEEFRWLPYVTTLLSTSLWTFYGLHK 61
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,450,466
Number of Sequences: 37544
Number of extensions: 357166
Number of successful extensions: 933
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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