Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30699
         (549 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46389| Best HMM Match : No HMM Matches (HMM E-Value=.)              67   8e-12
SB_37814| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.1  
SB_29236| Best HMM Match : TMS_TDE (HMM E-Value=0)                     29   2.5  
SB_5807| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.5  
SB_43976| Best HMM Match : I-set (HMM E-Value=0.0035)                  28   5.8  
SB_22048| Best HMM Match : RHS_repeat (HMM E-Value=0.00058)            28   5.8  
SB_43213| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_27085| Best HMM Match : Filamin (HMM E-Value=1.5)                   27   7.6  
SB_24443| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_28962| Best HMM Match : F-box (HMM E-Value=6.3e-10)                 27   7.6  
SB_11762| Best HMM Match : 4HBT (HMM E-Value=1.6e-19)                  27   7.6  
SB_5625| Best HMM Match : DBR1 (HMM E-Value=1.1e-26)                   27   7.6  

>SB_46389| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score = 67.3 bits (157), Expect = 8e-12
 Identities = 37/117 (31%), Positives = 62/117 (52%)
 Frame = +1

Query: 145 HRSPIPTTPDKALTLDYPTKQAYLVFTIPLPRARPQAPVSNAGHLSAIPTSMLSTSFKPT 324
           HR+  PT PDKA  L Y  KQ ++++ + + R   + PV   G     P +      K  
Sbjct: 37  HRATRPTRPDKARRLGYKAKQGFVIYRVRVRRGGRKRPVPK-GATYGKPVNQGVNELKFQ 95

Query: 325 RNLQSIAQATCLSVLPVLSIYSALTGFHNILHTRYFQVILVDPSHNSIRLDPKVNWI 495
           R+L+S+A+         L + ++     + ++ +YF+VI+VDP H +IR D ++NWI
Sbjct: 96  RSLRSVAEERAGRYCGGLRVLNSYWVGQDSIY-KYFEVIMVDPFHKAIRRDARINWI 151


>SB_37814| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 333

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +3

Query: 342 CSGNVLVRPSGALHLFSSYWVSQHSSYKVFPGYPRGPV 455
           C+G ++ RP   L L S  + S H    V+P YP  PV
Sbjct: 133 CTGPLVPRPVRPLMLASDQFSSLHMFPMVYPSYPEIPV 170


>SB_29236| Best HMM Match : TMS_TDE (HMM E-Value=0)
          Length = 834

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +2

Query: 365 SFRCSPSIQLLLGFTTFFIQGISRLSSWTRHTIPFVSILR 484
           SF   PS++  LG   FF   ISRL +   H   ++++ R
Sbjct: 361 SFMYLPSVRQALGHNRFFCSKISRLGNCMSHDPGYLAVYR 400


>SB_5807| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 250

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +1

Query: 274 HLSAIPTSMLSTSFKPTRNLQSIAQATCLSVLPVLSIYSALTGFHNILH 420
           HL A+P +    SF P +    I Q   +SVLP      +++ F N++H
Sbjct: 23  HLEALPDNGHVFSFNPLKVTSLILQGNIISVLP-----DSISNFKNLVH 66


>SB_43976| Best HMM Match : I-set (HMM E-Value=0.0035)
          Length = 285

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/22 (59%), Positives = 13/22 (59%)
 Frame = +1

Query: 199 TKQAYLVFTIPLPRARPQAPVS 264
           TKQ  L FTIP PR R   P S
Sbjct: 114 TKQINLSFTIPSPRTRSYPPAS 135


>SB_22048| Best HMM Match : RHS_repeat (HMM E-Value=0.00058)
          Length = 820

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = +3

Query: 267 RWPLIGNPNIHAVNQLQAHTQPSIHCSGNVLVR--PSGALHLFSSYWVSQHSSYKVFPGY 440
           R+ L GNP        ++  QP  + SGN   R  PSG  +L S Y++S +   + +P +
Sbjct: 416 RYYLSGNPQSRYYPSWKSTAQPRYYHSGNPQSRYYPSG--NLQSRYYLSGNPQSRYYPSW 473


>SB_43213| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 919

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 302 CQPASSPHATFNPLLRQRAC 361
           CQP+SS H+ F+P  +  AC
Sbjct: 132 CQPSSSSHSLFSPEEKGEAC 151


>SB_27085| Best HMM Match : Filamin (HMM E-Value=1.5)
          Length = 634

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +2

Query: 41  AYTYIQHLYTKKLTHLMPFF 100
           AY Y  HL+T+K+T  M FF
Sbjct: 88  AYPYPHHLHTRKMTIKMAFF 107


>SB_24443| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 148

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = +3

Query: 273 PLIGNPNIHAVNQLQAHTQPSIHCSGNVLVRPSGALH 383
           P+I  PN+H  + +  +T+P++H +  ++V     +H
Sbjct: 37  PIIPVPNVHQNDVIVVNTRPNVHQNDVIVVNTRPNVH 73


>SB_28962| Best HMM Match : F-box (HMM E-Value=6.3e-10)
          Length = 447

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +1

Query: 400 GFHNILHTRYFQVILVDPSHNSIR-LDPKVNWILNA 504
           GF +ILH R +Q I     ++S+  LD + N++L+A
Sbjct: 264 GFRHILHLRIYQEIKPTAKYSSLETLDLRWNFLLSA 299


>SB_11762| Best HMM Match : 4HBT (HMM E-Value=1.6e-19)
          Length = 519

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +1

Query: 352 TCLSVLPVLSIYSALTGFHNILHTRYFQVILVDPSHNSIRLDP 480
           T + V  V+S+   +TG    +   +F  +  D  HN ++L P
Sbjct: 84  TSMEVGVVVSVEDLITGEKREVSRGFFTFVAFDAKHNKVQLSP 126


>SB_5625| Best HMM Match : DBR1 (HMM E-Value=1.1e-26)
          Length = 566

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
 Frame = +3

Query: 270 WP--LIGNPNIHAVNQLQAHTQPSIHCSGNVLVRPSGAL--HLFSSYWVSQHSSYKVFPG 437
           WP  +  + N+ ++ + ++  +P I  S  +   P+G L  HL  SYW S H   K FP 
Sbjct: 176 WPQGVYHHGNVQSLYRYKSFLKPEIE-SNTLGSAPAGELLTHLQPSYWFSAHLHVK-FPA 233

Query: 438 -YPRG 449
             P G
Sbjct: 234 IIPHG 238


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,098,489
Number of Sequences: 59808
Number of extensions: 424190
Number of successful extensions: 1061
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1057
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)