Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30699
         (549 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88168-3|AAC24397.1|  204|Caenorhabditis elegans Ribosomal prote...    62   3e-10
Z70035-1|CAA93861.1|  432|Caenorhabditis elegans Hypothetical pr...    29   1.7  
U29097-5|AAA68413.1|  222|Caenorhabditis elegans Hypothetical pr...    29   1.7  
Z68008-6|CAA92001.1|  362|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AF039045-2|AAO38660.2|  217|Caenorhabditis elegans Hypothetical ...    28   3.9  
AF026204-3|AAB71253.1|  424|Caenorhabditis elegans Hypothetical ...    28   3.9  
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p...    28   5.1  
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p...    28   5.1  
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p...    28   5.1  
U40940-3|AAN39667.1|  455|Caenorhabditis elegans Nuclear hormone...    27   8.9  
U40940-2|AAM69090.1|  434|Caenorhabditis elegans Nuclear hormone...    27   8.9  
U40940-1|AAM69089.1|  439|Caenorhabditis elegans Nuclear hormone...    27   8.9  
AF273782-1|AAG15131.1|  439|Caenorhabditis elegans nuclear recep...    27   8.9  

>U88168-3|AAC24397.1|  204|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 15 protein.
          Length = 204

 Score = 61.7 bits (143), Expect = 3e-10
 Identities = 34/121 (28%), Positives = 60/121 (49%)
 Frame = +1

Query: 145 HRSPIPTTPDKALTLDYPTKQAYLVFTIPLPRARPQAPVSNAGHLSAIPTSMLSTSFKPT 324
           HR P PT P+KA  L Y  KQ ++V+ + + R   + PV   G     P +      K  
Sbjct: 37  HRVPRPTRPEKARRLGYRAKQGFVVYRVRVRRGNRKRPVCK-GQTYGKPKTHGVNELKNA 95

Query: 325 RNLQSIAQATCLSVLPVLSIYSALTGFHNILHTRYFQVILVDPSHNSIRLDPKVNWILNA 504
           ++ Q++A+      L  L + ++     +  + ++++V+L+DP H +IR +P   WI   
Sbjct: 96  KSKQAVAEGRAGRRLGSLRVLNSYWVAEDSTY-KFYEVVLIDPFHKAIRRNPDTQWITKP 154

Query: 505 V 507
           V
Sbjct: 155 V 155


>Z70035-1|CAA93861.1|  432|Caenorhabditis elegans Hypothetical
           protein R09D1.1 protein.
          Length = 432

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +1

Query: 88  YAFFLRLSLYGSTVT*LLWHRSPIPTTPDKALTLDYP 198
           Y   +   ++   +T LL+H +  PTT DKA+  ++P
Sbjct: 35  YTVLIACGVFAYAITSLLFHLNHNPTTLDKAMPTEHP 71


>U29097-5|AAA68413.1|  222|Caenorhabditis elegans Hypothetical
           protein F18C5.5 protein.
          Length = 222

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
 Frame = +2

Query: 308 PASSPHA--TFNPLLRQRACPSFRCSPSIQLLLGFTT 412
           P  +PH   TF P+      P+    PS Q LLG TT
Sbjct: 116 PTLAPHTFPTFTPIPGMPTMPALTMPPSFQRLLGITT 152


>Z68008-6|CAA92001.1|  362|Caenorhabditis elegans Hypothetical
           protein R08B4.2 protein.
          Length = 362

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 20/77 (25%), Positives = 39/77 (50%)
 Frame = +2

Query: 224 QSLCHVLGRKLQFLTLATYRQSQHPCCQPASSPHATFNPLLRQRACPSFRCSPSIQLLLG 403
           Q+  H+L  +++  T  + R+SQ P     S P  T +P+L     P+F+ + ++ +L G
Sbjct: 215 QAAAHLLNEQVRIAT--SDRRSQSP-----SVPVTTSSPILPTSVTPTFQNADALNMLFG 267

Query: 404 FTTFFIQGISRLSSWTR 454
             T   Q +  +  ++R
Sbjct: 268 GITPVTQQLLYVQQFSR 284


>AF039045-2|AAO38660.2|  217|Caenorhabditis elegans Hypothetical
           protein F15E11.15a protein.
          Length = 217

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = +3

Query: 42  PTHIFNTCIRKN*PILCLFSSPLTLWQYRHLT-PMAPLSHS 161
           P + ++TCIRK  P+  LFSS  T++  R +T P AP + +
Sbjct: 20  PVYSWSTCIRKTSPV--LFSS--TIFALRRMTAPSAPCAQA 56


>AF026204-3|AAB71253.1|  424|Caenorhabditis elegans Hypothetical
           protein C30E1.8 protein.
          Length = 424

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = +1

Query: 292 TSMLSTSFKPTRNLQSIAQATCLSVLPVLSIYSALTGFHNILHTRYFQVILVDPS 456
           TS + T+ K T N++ I     L+ +    +Y     F NI+   +F  I  DP+
Sbjct: 308 TSTIQTTTKSTVNVKLIVSTVTLNTI---WLYDRHANFRNIIFYSFFPAIQFDPA 359


>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
            protein K07E12.1b protein.
          Length = 12268

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 226  IPLPRARPQAPVSNAGHLSAIPTSMLSTSFKPTRNLQSI 342
            IPL +     P  N G+   +P+   +T  KPT+  +SI
Sbjct: 5149 IPLSKDGSPLPTDNTGNYVLVPSDEGATEEKPTQGSESI 5187


>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
            protein K07E12.1a protein.
          Length = 13100

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 226  IPLPRARPQAPVSNAGHLSAIPTSMLSTSFKPTRNLQSI 342
            IPL +     P  N G+   +P+   +T  KPT+  +SI
Sbjct: 5194 IPLSKDGSPLPTDNTGNYVLVPSDEGATEEKPTQGSESI 5232


>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
            protein.
          Length = 13100

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 226  IPLPRARPQAPVSNAGHLSAIPTSMLSTSFKPTRNLQSI 342
            IPL +     P  N G+   +P+   +T  KPT+  +SI
Sbjct: 5194 IPLSKDGSPLPTDNTGNYVLVPSDEGATEEKPTQGSESI 5232


>U40940-3|AAN39667.1|  455|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 40, isoform c protein.
          Length = 455

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = +2

Query: 2   NTLHVCHTLLTSGAYTYIQHLYTKKLTHLMPFFFASHSMAVPSLDSYG 145
           NT    HT+L  G Y  ++ L  K+ T ++      H+     L S G
Sbjct: 335 NTWEEMHTMLIDGCYKMMRQLKIKESTFVLYKMLLFHNPDADGLSSLG 382


>U40940-2|AAM69090.1|  434|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 40, isoform b protein.
          Length = 434

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = +2

Query: 2   NTLHVCHTLLTSGAYTYIQHLYTKKLTHLMPFFFASHSMAVPSLDSYG 145
           NT    HT+L  G Y  ++ L  K+ T ++      H+     L S G
Sbjct: 314 NTWEEMHTMLIDGCYKMMRQLKIKESTFVLYKMLLFHNPDADGLSSLG 361


>U40940-1|AAM69089.1|  439|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 40, isoform a protein.
          Length = 439

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = +2

Query: 2   NTLHVCHTLLTSGAYTYIQHLYTKKLTHLMPFFFASHSMAVPSLDSYG 145
           NT    HT+L  G Y  ++ L  K+ T ++      H+     L S G
Sbjct: 319 NTWEEMHTMLIDGCYKMMRQLKIKESTFVLYKMLLFHNPDADGLSSLG 366


>AF273782-1|AAG15131.1|  439|Caenorhabditis elegans nuclear receptor
           NHR-40 protein.
          Length = 439

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = +2

Query: 2   NTLHVCHTLLTSGAYTYIQHLYTKKLTHLMPFFFASHSMAVPSLDSYG 145
           NT    HT+L  G Y  ++ L  K+ T ++      H+     L S G
Sbjct: 319 NTWEEMHTMLIDGCYKMMRQLKIKESTFVLYKMLLFHNPDADGLSSLG 366


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,612,005
Number of Sequences: 27780
Number of extensions: 294462
Number of successful extensions: 867
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)