BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30699 (549 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U88168-3|AAC24397.1| 204|Caenorhabditis elegans Ribosomal prote... 62 3e-10 Z70035-1|CAA93861.1| 432|Caenorhabditis elegans Hypothetical pr... 29 1.7 U29097-5|AAA68413.1| 222|Caenorhabditis elegans Hypothetical pr... 29 1.7 Z68008-6|CAA92001.1| 362|Caenorhabditis elegans Hypothetical pr... 29 2.9 AF039045-2|AAO38660.2| 217|Caenorhabditis elegans Hypothetical ... 28 3.9 AF026204-3|AAB71253.1| 424|Caenorhabditis elegans Hypothetical ... 28 3.9 U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p... 28 5.1 U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 28 5.1 AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 28 5.1 U40940-3|AAN39667.1| 455|Caenorhabditis elegans Nuclear hormone... 27 8.9 U40940-2|AAM69090.1| 434|Caenorhabditis elegans Nuclear hormone... 27 8.9 U40940-1|AAM69089.1| 439|Caenorhabditis elegans Nuclear hormone... 27 8.9 AF273782-1|AAG15131.1| 439|Caenorhabditis elegans nuclear recep... 27 8.9 >U88168-3|AAC24397.1| 204|Caenorhabditis elegans Ribosomal protein, large subunitprotein 15 protein. Length = 204 Score = 61.7 bits (143), Expect = 3e-10 Identities = 34/121 (28%), Positives = 60/121 (49%) Frame = +1 Query: 145 HRSPIPTTPDKALTLDYPTKQAYLVFTIPLPRARPQAPVSNAGHLSAIPTSMLSTSFKPT 324 HR P PT P+KA L Y KQ ++V+ + + R + PV G P + K Sbjct: 37 HRVPRPTRPEKARRLGYRAKQGFVVYRVRVRRGNRKRPVCK-GQTYGKPKTHGVNELKNA 95 Query: 325 RNLQSIAQATCLSVLPVLSIYSALTGFHNILHTRYFQVILVDPSHNSIRLDPKVNWILNA 504 ++ Q++A+ L L + ++ + + ++++V+L+DP H +IR +P WI Sbjct: 96 KSKQAVAEGRAGRRLGSLRVLNSYWVAEDSTY-KFYEVVLIDPFHKAIRRNPDTQWITKP 154 Query: 505 V 507 V Sbjct: 155 V 155 >Z70035-1|CAA93861.1| 432|Caenorhabditis elegans Hypothetical protein R09D1.1 protein. Length = 432 Score = 29.5 bits (63), Expect = 1.7 Identities = 12/37 (32%), Positives = 21/37 (56%) Frame = +1 Query: 88 YAFFLRLSLYGSTVT*LLWHRSPIPTTPDKALTLDYP 198 Y + ++ +T LL+H + PTT DKA+ ++P Sbjct: 35 YTVLIACGVFAYAITSLLFHLNHNPTTLDKAMPTEHP 71 >U29097-5|AAA68413.1| 222|Caenorhabditis elegans Hypothetical protein F18C5.5 protein. Length = 222 Score = 29.5 bits (63), Expect = 1.7 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 2/37 (5%) Frame = +2 Query: 308 PASSPHA--TFNPLLRQRACPSFRCSPSIQLLLGFTT 412 P +PH TF P+ P+ PS Q LLG TT Sbjct: 116 PTLAPHTFPTFTPIPGMPTMPALTMPPSFQRLLGITT 152 >Z68008-6|CAA92001.1| 362|Caenorhabditis elegans Hypothetical protein R08B4.2 protein. Length = 362 Score = 28.7 bits (61), Expect = 2.9 Identities = 20/77 (25%), Positives = 39/77 (50%) Frame = +2 Query: 224 QSLCHVLGRKLQFLTLATYRQSQHPCCQPASSPHATFNPLLRQRACPSFRCSPSIQLLLG 403 Q+ H+L +++ T + R+SQ P S P T +P+L P+F+ + ++ +L G Sbjct: 215 QAAAHLLNEQVRIAT--SDRRSQSP-----SVPVTTSSPILPTSVTPTFQNADALNMLFG 267 Query: 404 FTTFFIQGISRLSSWTR 454 T Q + + ++R Sbjct: 268 GITPVTQQLLYVQQFSR 284 >AF039045-2|AAO38660.2| 217|Caenorhabditis elegans Hypothetical protein F15E11.15a protein. Length = 217 Score = 28.3 bits (60), Expect = 3.9 Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 1/41 (2%) Frame = +3 Query: 42 PTHIFNTCIRKN*PILCLFSSPLTLWQYRHLT-PMAPLSHS 161 P + ++TCIRK P+ LFSS T++ R +T P AP + + Sbjct: 20 PVYSWSTCIRKTSPV--LFSS--TIFALRRMTAPSAPCAQA 56 >AF026204-3|AAB71253.1| 424|Caenorhabditis elegans Hypothetical protein C30E1.8 protein. Length = 424 Score = 28.3 bits (60), Expect = 3.9 Identities = 16/55 (29%), Positives = 26/55 (47%) Frame = +1 Query: 292 TSMLSTSFKPTRNLQSIAQATCLSVLPVLSIYSALTGFHNILHTRYFQVILVDPS 456 TS + T+ K T N++ I L+ + +Y F NI+ +F I DP+ Sbjct: 308 TSTIQTTTKSTVNVKLIVSTVTLNTI---WLYDRHANFRNIIFYSFFPAIQFDPA 359 >U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical protein K07E12.1b protein. Length = 12268 Score = 27.9 bits (59), Expect = 5.1 Identities = 13/39 (33%), Positives = 20/39 (51%) Frame = +1 Query: 226 IPLPRARPQAPVSNAGHLSAIPTSMLSTSFKPTRNLQSI 342 IPL + P N G+ +P+ +T KPT+ +SI Sbjct: 5149 IPLSKDGSPLPTDNTGNYVLVPSDEGATEEKPTQGSESI 5187 >U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical protein K07E12.1a protein. Length = 13100 Score = 27.9 bits (59), Expect = 5.1 Identities = 13/39 (33%), Positives = 20/39 (51%) Frame = +1 Query: 226 IPLPRARPQAPVSNAGHLSAIPTSMLSTSFKPTRNLQSI 342 IPL + P N G+ +P+ +T KPT+ +SI Sbjct: 5194 IPLSKDGSPLPTDNTGNYVLVPSDEGATEEKPTQGSESI 5232 >AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin protein. Length = 13100 Score = 27.9 bits (59), Expect = 5.1 Identities = 13/39 (33%), Positives = 20/39 (51%) Frame = +1 Query: 226 IPLPRARPQAPVSNAGHLSAIPTSMLSTSFKPTRNLQSI 342 IPL + P N G+ +P+ +T KPT+ +SI Sbjct: 5194 IPLSKDGSPLPTDNTGNYVLVPSDEGATEEKPTQGSESI 5232 >U40940-3|AAN39667.1| 455|Caenorhabditis elegans Nuclear hormone receptor familyprotein 40, isoform c protein. Length = 455 Score = 27.1 bits (57), Expect = 8.9 Identities = 14/48 (29%), Positives = 21/48 (43%) Frame = +2 Query: 2 NTLHVCHTLLTSGAYTYIQHLYTKKLTHLMPFFFASHSMAVPSLDSYG 145 NT HT+L G Y ++ L K+ T ++ H+ L S G Sbjct: 335 NTWEEMHTMLIDGCYKMMRQLKIKESTFVLYKMLLFHNPDADGLSSLG 382 >U40940-2|AAM69090.1| 434|Caenorhabditis elegans Nuclear hormone receptor familyprotein 40, isoform b protein. Length = 434 Score = 27.1 bits (57), Expect = 8.9 Identities = 14/48 (29%), Positives = 21/48 (43%) Frame = +2 Query: 2 NTLHVCHTLLTSGAYTYIQHLYTKKLTHLMPFFFASHSMAVPSLDSYG 145 NT HT+L G Y ++ L K+ T ++ H+ L S G Sbjct: 314 NTWEEMHTMLIDGCYKMMRQLKIKESTFVLYKMLLFHNPDADGLSSLG 361 >U40940-1|AAM69089.1| 439|Caenorhabditis elegans Nuclear hormone receptor familyprotein 40, isoform a protein. Length = 439 Score = 27.1 bits (57), Expect = 8.9 Identities = 14/48 (29%), Positives = 21/48 (43%) Frame = +2 Query: 2 NTLHVCHTLLTSGAYTYIQHLYTKKLTHLMPFFFASHSMAVPSLDSYG 145 NT HT+L G Y ++ L K+ T ++ H+ L S G Sbjct: 319 NTWEEMHTMLIDGCYKMMRQLKIKESTFVLYKMLLFHNPDADGLSSLG 366 >AF273782-1|AAG15131.1| 439|Caenorhabditis elegans nuclear receptor NHR-40 protein. Length = 439 Score = 27.1 bits (57), Expect = 8.9 Identities = 14/48 (29%), Positives = 21/48 (43%) Frame = +2 Query: 2 NTLHVCHTLLTSGAYTYIQHLYTKKLTHLMPFFFASHSMAVPSLDSYG 145 NT HT+L G Y ++ L K+ T ++ H+ L S G Sbjct: 319 NTWEEMHTMLIDGCYKMMRQLKIKESTFVLYKMLLFHNPDADGLSSLG 366 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,612,005 Number of Sequences: 27780 Number of extensions: 294462 Number of successful extensions: 867 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 813 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 866 length of database: 12,740,198 effective HSP length: 77 effective length of database: 10,601,138 effective search space used: 1113119490 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -