Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30699
         (549 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   2.0  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.0  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   6.2  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   6.2  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    21   6.2  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   6.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.2  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 344 LRQRACPSFRCSPSIQLLLG 403
           +R+R  P+FRC PS +   G
Sbjct: 413 VRRRYQPAFRCKPSQRFASG 432


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 253 APVSNAGHLSAIPTSMLSTSFKP 321
           +P S+  +LSA  TS  STS +P
Sbjct: 822 SPASSPRYLSAAATSSTSTSPRP 844


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 5/11 (45%), Positives = 10/11 (90%)
 Frame = +3

Query: 396 YWVSQHSSYKV 428
           YW+ ++S+YK+
Sbjct: 283 YWIDRNSAYKI 293


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +2

Query: 50  YIQHLYTKKLTHLMPFFFASHSMAVPSL 133
           YIQ L   + T     FFASH +   SL
Sbjct: 457 YIQRLKAIRATLKASPFFASHEVVGSSL 484


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +2

Query: 50  YIQHLYTKKLTHLMPFFFASHSMAVPSL 133
           YIQ L   + T     FFASH +   SL
Sbjct: 372 YIQRLKAIRATLKASPFFASHEVVGSSL 399


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +2

Query: 50  YIQHLYTKKLTHLMPFFFASHSMAVPSL 133
           YIQ L   + T     FFASH +   SL
Sbjct: 691 YIQRLKAIRATLKASPFFASHEVVGSSL 718


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +3

Query: 330 PSIHCSGNVLVRPSGALHL 386
           P     G  LV PSG LH+
Sbjct: 149 PGDDYDGKYLVLPSGELHI 167


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,943
Number of Sequences: 438
Number of extensions: 3378
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)